PDB
7JJO
Resolution
2.6 Å
Released
Sept. 2, 2020
Receptor
β1
Class
A
Species
Meleagris gallopavo
Ligand
Function
LEVISOPRENALINE
Agonist
Reference
10.1016/J.MOLCEL.2020.08.001

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
LEVISOPRENALINE W117 3.28x28 TM3 aromatic (pi-cation)
LEVISOPRENALINE W117 3.28x28 TM3 hydrophobic
LEVISOPRENALINE T118 3.29x29 TM3 hydrophobic
LEVISOPRENALINE D121 3.32x32 TM3 polar (charge-charge)
LEVISOPRENALINE D121 3.32x32 TM3 polar (hydrogen bond)
LEVISOPRENALINE V122 3.33x33 TM3 hydrophobic
LEVISOPRENALINE V125 3.36x36 TM3 hydrophobic
LEVISOPRENALINE F201 45.52x52 ECL2 aromatic (pi-cation)
LEVISOPRENALINE F201 45.52x52 ECL2 hydrophobic
LEVISOPRENALINE S211 5.42x43 TM5 polar (hydrogen bond)
LEVISOPRENALINE S215 5.46x461 TM5 polar (hydrogen bond)
LEVISOPRENALINE F306 6.51x51 TM6 hydrophobic
LEVISOPRENALINE F307 6.52x52 TM6 aromatic (edge-to-face)
LEVISOPRENALINE N310 6.55x55 TM6 Van der Waals
LEVISOPRENALINE N329 7.39x38 TM7 polar (hydrogen bond)
LEVISOPRENALINE Y333 7.43x42 TM7 Van der Waals

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
Helix box plot — Download: PNG | SVG V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7

GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x28 3.28x28 W117
3x29 3.29x29 T118
3x32 3.32x32 D121
3x33 3.33x33 V122
3x36 3.36x36 V125
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
5x461 5.46x461 S215
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
6x55 6.55x55 N310
TM7
7x38 7.39x38 N329
7x42 7.43x42 Y333