Structure information

RXFP4

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7YK6

SPECIES

Homo sapiens

RESOLUTION

3.030

PREFERRED CHAIN

R

REFERENCE

10.1038/S41467-023-36182-Z

PUBLICATION DATE

March 1, 2023

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL4522365 E100 2.63x63 TM2 polar (charge-assisted hydrogen bond)
CHEMBL4522365 F105 ECL1 hydrophobic
CHEMBL4522365 F105 ECL1 Van der Waals
CHEMBL4522365 L118 3.29x29 TM3 Van der Waals
CHEMBL4522365 V122 3.33x33 TM3 Van der Waals
CHEMBL4522365 L192 45.51x51 ECL2 hydrophobic
CHEMBL4522365 L192 45.51x51 ECL2 Van der Waals
CHEMBL4522365 R194 ECL2 Van der Waals
CHEMBL4522365 T295 7.39x38 TM7 polar (hydrogen bond)
CHEMBL4522365 H299 7.43x42 TM7 polar (hydrogen bond)
CHEMBL4522365 H299 7.43x42 TM7 Van der Waals

Ligands

CHEMBL4522365

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

L N G L L G I A G V L G Y A L A V M L R 1 F N L A L A D L G L A L T L P F W A A E 2 A T I L F I S A Y V N L V T A T L V M K 3 A R I A T L A V W A A A A L V T V P T 4 Y S T T I V G L P V M F A L V V R Q L Q Y 5 R I L V A S F F L C W F P N H V V T L W 6 V P N L C S N S H A L C T T V P F V Y 7
Download: PNG | SVG
ICL1 R A R A P ICL1ECL1 F H W P F ECL1ICL2 A A G P G T H L ICL2ECL2 V E G E V C G V R L C L L R F P S R ECL2ICL3 Q R ICL3ECL3 V P W N S ECL3N-term M P T L N T S A S P P T F F W A N A S G G S V L S A D D A P M P V K N-termC-term L R L R L W P Q G G G W V Q Q V A L K Q V G R R W V A S N P R E S R P S T L L T N L D R G T P G C-term F L A L R L M V A L A Y G L V G A I G L L G N L A V L W V L S N C G P P S D T F V F N L A L A D L G L A L T L P F W A A E S A L D G G A L C K M V L T A T V L N V Y A S I F L I T A L S V A R Y W V V A M S L F W A R I A T L A V W A A A A L V T V P T A V F G Y W L G A Y Q L Q R V V L A F M V P L G V I T T S Y L L L L A F L Q R R R R Q D S R V V A R S V R I L V A S F F L C W F P N H V V T L W G V L V K F D L T F Y T I Q T Y V F P V T T C L A H S N S C L N P V L Y C L L R R E L A G P R Q A T F R D
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
RXFP4
TM2
2x63 2.63x63 E100
TM3
3x29 3.29x29 L118
3x33 3.33x33 V122
ECL2
45x51 45.51x51 L192
TM7
7x38 7.39x38 T295
7x42 7.43x42 H299