Structure information

XCR1

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

9AST

SPECIES

Homo sapiens

RESOLUTION

3.070

PREFERRED CHAIN

R

REFERENCE

10.1073/PNAS.2405732121

PUBLICATION DATE

Dec. 11, 2024

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Lymphotactin P21 N-term hydrophobic
Lymphotactin C22 N-term Van der Waals
Lymphotactin C22 N-term polar (hydrogen bond with backbone)
Lymphotactin E23 N-term Van der Waals
Lymphotactin N24 N-term Van der Waals
Lymphotactin N24 N-term polar (hydrogen bond with backbone)
Lymphotactin W27 1.28x28 TM1 Van der Waals
Lymphotactin W27 1.28x28 TM1 hydrophobic
Lymphotactin W87 2.60x60 TM2 Van der Waals
Lymphotactin W87 2.60x60 TM2 hydrophobic
Lymphotactin Y91 2.64x64 TM2 hydrophobic
Lymphotactin Y91 2.64x64 TM2 Van der Waals
Lymphotactin N106 3.29x29 TM3 polar (hydrogen bond)
Lymphotactin N106 3.29x29 TM3 Van der Waals
Lymphotactin F109 3.32x32 TM3 Van der Waals
Lymphotactin F109 3.32x32 TM3 hydrophobic
Lymphotactin C175 45.50x50 ECL2 Van der Waals
Lymphotactin D176 45.51x51 ECL2 Van der Waals
Lymphotactin Y177 45.52x52 ECL2 hydrophobic
Lymphotactin Y177 45.52x52 ECL2 Van der Waals
Lymphotactin Y183 5.36x36 TM5 Van der Waals
Lymphotactin S186 5.39x39 TM5 Van der Waals
Lymphotactin Y241 6.51x51 TM6 Van der Waals
Lymphotactin R273 7.39x38 TM7 polar (charge-assisted hydrogen bond)

Ligands

Lymphotactin

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Residue Diagrams

S N G V L S L L F V L C Y L V T T A L T 1 L N L C L S D L V F A C L L P V W I S P 2 I T L F F I S S Y L S I S F I M N L L K 3 R V L V T M A V W V A S I L S S I L D T 4 Y C F L I I G L S L L F F L N H Q Y V S 5 F A I V V A Y F L S W G P Y N F T L F L 6 V P N F C C H S F A L N R C I L L A Y 7
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ICL1 E S L E ICL1ECL1 G W V L ECL1ICL2 P L S T L R V P ICL2ECL2 K V L S S G C D Y S ECL2ICL3 R S K ICL3ECL3 I I R ECL3N-term M E S S G N P E S T T F F Y Y D L Q S Q P C E N N-termC-term F W F C R L Q A P S P A S I P H S P G A F A Y E G A S F Y C-term Q A W V F A T L A T T V L Y C L V F L L S L V G N S L V L W V L V K Y S L T N I F I L N L C L S D L V F A C L L P V W I S P Y H W G D F L C K L L N M I F S I S L Y S S I F F L T I M T I H R Y L S V V S T L R C R V L V T M A V W V A S I L S S I L D T I F H E L T W Y L T S V Y Q H N L F F L L S L G I I L F C Y V E I L R T L F R S R R H R T V K L I F A I V V A Y F L S W G P Y N F T L F L Q T L F R T Q S C E A K Q Q L E Y A L L I C R N L A F S H C C F N P V L Y V F V G V K L K H F R T H V L R Q
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Residue Table


GPCRdb(A)
GPCRdb(A)
XCR1
TM1
1x28 1.28x28 W27
TM2
2x60 2.60x60 W87
2x64 2.64x64 Y91
TM3
3x29 3.29x29 N106
3x32 3.32x32 F109
ECL2
45x50 45.50x50 C175
45x51 45.51x51 D176
45x52 45.52x52 Y177
TM5
5x36 5.36x36 Y183
5x39 5.39x39 S186
TM6
6x51 6.51x51 Y241
TM7
7x38 7.39x38 R273