M4 receptor - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

3.4 Å

REFERENCE

PUBLICATION DATE

May 11, 2022

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

LIGANDS

LY2119620 - PAM pubchem gtoplig chembl_ligand ,

iperoxo - Agonist pubchem gtoplig chembl_ligand

PHYSIOLOGICAL LIGANDS

acetylcholine



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic TM6 R 394 6x29 G.H5 K 345 G.H5.17
Hydrophobic TM6 M 391 6x26 G.S6 Y 320 G.S6.02
Hydrophobic ICL2 L 138 34x51 G.S3 L 194 G.S3.01
Hydrophobic ICL2 A 142 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM7 C 456 7x56 G.H5 F 354 G.H5.26
Van-der-waals TM7 C 456 7x56 G.H5 F 354 G.H5.26
Hydrophobic TM7 C 456 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 C 456 7x56 G.H5 G 352 G.H5.24
Polar ICL4 N 457 - G.H5 D 350 G.H5.22
Hydrophobic ICL2 P 137 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM3 R 130 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 130 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM3 V 134 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 134 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM5 I 218 5x61 G.H5 L 353 G.H5.25
Van-der-waals TM5 I 218 5x61 G.H5 L 353 G.H5.25
Polar TM6 T 401 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 401 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 401 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 401 6x36 G.H5 F 354 G.H5.26
Van-der-waals TM6 T 401 6x36 G.H5 F 354 G.H5.26
Hydrophobic TM6 R 394 6x29 G.H5 F 354 G.H5.26
Polar TM2 N 67 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 N 67 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM6 I 402 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 I 402 6x37 G.H5 L 353 G.H5.25
Hydrophobic ICL4 N 457 - G.H5 G 352 G.H5.24
Hydrophobic ICL2 L 138 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 138 34x51 G.H5 F 336 G.H5.08
Polar TM3 R 130 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 130 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 130 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 137 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 137 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 138 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 L 138 34x51 G.H5 T 340 G.H5.12
Hydrophobic ICL2 P 137 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 137 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM6 V 398 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM6 V 398 6x33 G.H5 F 354 G.H5.26
Polar TM3 C 133 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 C 133 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 C 133 3x53 G.H5 C 351 G.H5.23
Aromatic TM6 K 397 6x32 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 397 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 397 6x32 G.H5 F 354 G.H5.26