CCR1 - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

2.9 Å

REFERENCE

PUBLICATION DATE

March 23, 2022

3D VIEW

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LIGAND INTERACTIONS

LIGANDS

Apo (no ligand) - Apo (no ligand)

ENDOGENOUS LIGANDS

CCL8, CCL13, CCL14, CCL16, CCL5, CCL7, CCL4, CCL23, CCL15, CCL3



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic ICL2 R 143 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 L 240 6x36 G.H5 L 353 G.H5.25
Polar H8 E 306 8x48 G.H5 F 354 G.H5.26
Hydrophobic H8 E 306 8x48 G.H5 F 354 G.H5.26
Van-der-waals H8 E 306 8x48 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 234 6x30 G.H5 F 354 G.H5.26
Hydrophobic TM3 I 135 3x54 G.H5 C 351 G.H5.23
Polar ICL2 R 143 34x55 G.s2s3 D 193 G.s2s3.02
Hydrophobic ICL2 R 143 34x55 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 R 143 34x55 G.s2s3 D 193 G.s2s3.02
Polar H8 G 305 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 G 305 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 G 305 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM3 I 135 3x54 G.H5 N 347 G.H5.19
Hydrophobic TM5 I 222 5x61 G.H5 L 353 G.H5.25
Hydrophobic ICL2 V 139 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL2 A 138 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL2 V 139 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM5 L 226 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 226 5x65 G.H5 L 348 G.H5.20
Ionic ICL2 R 145 34x57 G.H5 D 350 G.H5.22
Polar ICL2 R 145 34x57 G.H5 D 350 G.H5.22
Hydrophobic ICL2 L 142 34x54 G.H5 I 343 G.H5.15
Hydrophobic ICL2 L 142 34x54 G.hns1 R 32 G.hns1.03
Polar TM3 A 134 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 134 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 134 3x53 G.H5 N 347 G.H5.19
Polar TM2 N 67 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 N 67 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM6 K 234 6x30 G.H5 L 348 G.H5.20
Hydrophobic TM6 A 237 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 A 237 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 A 237 6x33 G.H5 F 354 G.H5.26
Hydrophobic ICL2 A 138 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 A 138 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM3 A 134 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 134 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 L 142 34x54 G.S3 L 194 G.S3.01
Hydrophobic TM5 I 225 5x64 G.H5 I 344 G.H5.16
Hydrophobic TM2 T 69 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM6 I 241 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 I 241 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 135 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 135 3x54 G.H5 L 348 G.H5.20
Ionic H8 E 306 8x48 G.H5 K 349 G.H5.21
Polar H8 E 306 8x48 G.H5 K 349 G.H5.21
Van-der-waals H8 E 306 8x48 G.H5 K 349 G.H5.21
Ionic ICL3 R 229 - G.H5 D 341 G.H5.13
Polar ICL3 R 229 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 R 229 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 R 229 - G.H5 D 341 G.H5.13
Polar TM2 T 69 2x39 G.H5 D 350 G.H5.22
Hydrophobic TM6 K 233 6x29 G.H5 F 354 G.H5.26
Van-der-waals ICL1 L 65 12x50 G.H5 D 350 G.H5.22
Polar H8 R 307 8x49 G.H5 K 349 G.H5.21
Hydrophobic H8 R 307 8x49 G.H5 K 349 G.H5.21
Van-der-waals H8 R 307 8x49 G.H5 K 349 G.H5.21
Polar TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic H8 R 307 8x49 G.H5 D 350 G.H5.22