VPAC2 receptor - Gs

GPCR CLASS (FAMILY)

Class B1 (Secretin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gs

G PROTEIN SPECIES

Bos taurus

PDB CODE

RESOLUTION

2.7 Å

REFERENCE

PUBLICATION DATE

May 18, 2022

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

LIGANDS

PACAP-27 - Agonist pubchem gtoplig pubchem

PHYSIOLOGICAL LIGANDS

GHRH, VIP, PACAP-27, PHI, secretin, PACAP-38



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Ionic TM5 K 309 5x64 G.H5 D 381 G.H5.13
Polar TM5 K 309 5x64 G.H5 D 381 G.H5.13
Van-der-waals TM5 K 309 5x64 G.H5 D 381 G.H5.13
Polar TM3 V 232 3x59 G.H5 R 380 G.H5.12
Hydrophobic TM3 V 232 3x59 G.H5 R 380 G.H5.12
Van-der-waals TM3 V 232 3x59 G.H5 R 380 G.H5.12
Polar TM5 K 309 5x64 G.H5 Q 384 G.H5.16
Hydrophobic TM5 K 309 5x64 G.H5 Q 384 G.H5.16
Van-der-waals TM5 K 309 5x64 G.H5 Q 384 G.H5.16
Polar TM6 R 325 6x37 G.H5 L 393 G.H5.25
Hydrophobic TM6 R 325 6x37 G.H5 L 393 G.H5.25
Polar TM2 R 158 2x46 G.H5 Q 390 G.H5.22
Hydrophobic TM2 R 158 2x46 G.H5 Q 390 G.H5.22
Hydrophobic TM5 K 309 5x64 G.H5 L 388 G.H5.20
Van-der-waals TM5 K 309 5x64 G.H5 L 388 G.H5.20
Hydrophobic TM3 L 231 3x58 G.H5 L 388 G.H5.20
Van-der-waals TM3 L 231 3x58 G.H5 L 388 G.H5.20
Hydrophobic TM6 L 332 6x44 G.H5 E 392 G.H5.24
Van-der-waals TM6 L 332 6x44 G.H5 E 392 G.H5.24
Polar TM6 R 325 6x37 G.H5 E 392 G.H5.24
Van-der-waals TM6 R 325 6x37 G.H5 E 392 G.H5.24
Hydrophobic TM5 L 306 5x61 G.H5 L 393 G.H5.25
Van-der-waals TM5 L 306 5x61 G.H5 L 393 G.H5.25
Hydrophobic ICL2 L 235 - G.S3 V 217 G.S3.01
Hydrophobic ICL2 M 234 - G.H5 R 380 G.H5.12
Hydrophobic ICL2 M 234 - G.S3 V 217 G.S3.01
Hydrophobic TM3 L 227 3x54 G.H5 Y 391 G.H5.23
Van-der-waals TM3 L 227 3x54 G.H5 Y 391 G.H5.23
Hydrophobic TM2 H 162 2x50 G.H5 Y 391 G.H5.23
Polar TM3 L 231 3x58 G.H5 Q 384 G.H5.16
Hydrophobic TM3 L 231 3x58 G.H5 Q 384 G.H5.16
Van-der-waals TM3 L 231 3x58 G.H5 Q 384 G.H5.16
Hydrophobic TM6 R 325 6x37 G.H5 L 394 G.H5.26
Hydrophobic ICL2 M 234 - G.H5 C 379 G.H5.11
Hydrophobic TM5 L 306 5x61 G.H5 L 388 G.H5.20
Polar TM5 K 309 5x64 G.H5 R 385 G.H5.17
Hydrophobic TM5 K 309 5x64 G.H5 R 385 G.H5.17
Van-der-waals TM5 K 309 5x64 G.H5 R 385 G.H5.17
Hydrophobic TM6 L 333 6x45 G.H5 L 393 G.H5.25
Hydrophobic TM5 L 306 5x61 G.H5 L 394 G.H5.26
Hydrophobic TM3 L 231 3x58 G.H5 H 387 G.H5.19
Hydrophobic TM5 L 310 5x65 G.H5 L 394 G.H5.26
Aromatic TM2 R 158 2x46 G.H5 Y 391 G.H5.23
Hydrophobic TM2 R 158 2x46 G.H5 Y 391 G.H5.23
Van-der-waals TM2 R 158 2x46 G.H5 Y 391 G.H5.23
Hydrophobic TM6 L 336 6x48 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 M 234 - G.S3 F 219 G.S3.03
Van-der-waals ICL2 M 234 - G.S3 F 219 G.S3.03
Van-der-waals TM3 Y 226 3x53 G.H5 Y 391 G.H5.23
Polar TM3 L 230 3x57 G.H5 H 387 G.H5.19
Hydrophobic TM3 L 230 3x57 G.H5 H 387 G.H5.19
Van-der-waals TM3 L 230 3x57 G.H5 H 387 G.H5.19
Polar TM6 S 329 6x41 G.H5 L 393 G.H5.25
Hydrophobic TM6 S 329 6x41 G.H5 L 393 G.H5.25
Van-der-waals TM6 S 329 6x41 G.H5 L 393 G.H5.25
Hydrophobic TM3 L 230 3x57 G.H5 Y 391 G.H5.23
Hydrophobic H8 N 379 8x47 G.H5 E 392 G.H5.24
Van-der-waals H8 N 379 8x47 G.H5 E 392 G.H5.24
Hydrophobic ICL2 M 234 - G.S1 H 41 G.S1.02
Van-der-waals ICL2 M 234 - G.S1 H 41 G.S1.02
Hydrophobic ICL2 M 234 - G.H5 F 376 G.H5.08
Van-der-waals ICL2 M 234 - G.H5 F 376 G.H5.08