Structure information

P2Y1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

4XNV

SPECIES

Homo sapiens

RESOLUTION

2.200

PREFERRED CHAIN

A

PUBLICATION DATE

April 1, 2015

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
BMS compound 16 [PMID:23368907] F62 1.43x43 TM1 aromatic (edge-to-face)
BMS compound 16 [PMID:23368907] L102 2.55x55 TM2 polar (hydrogen bond with backbone)
BMS compound 16 [PMID:23368907] L102 2.55x55 TM2 polar (hydrogen bond with backbone)
BMS compound 16 [PMID:23368907] P105 2.58x58 TM2 hydrophobic
BMS compound 16 [PMID:23368907] A106 2.59x59 TM2 hydrophobic
BMS compound 16 [PMID:23368907] F119 23.52x52 ECL1 aromatic (face-to-edge)
BMS compound 16 [PMID:23368907] M123 3.24x24 TM3 hydrophobic

Ligands

BMS compound 16 [PMID:23368907]

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Residue Diagrams

S N G L F G I I F V L I Y V A P L Y Y F 1 F N L A L A D F L Y V L T L P A L I F Y 2 C T L F L I S G Y L N V H F I F R Q L K 3 A I C I S V L V W L I V V V A I S P I L 4 Y C G L I L V L P V C F M A V T T C M S Y 5 V I I V L T V F V A S Y I P F H V M K T M 6 I P D V C S N L S A L G R T V Q Y T A 7
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ICL1 M K P W ICL1ECL1 K T D W I F ECL1ICL2 P L K S L G R L ICL2ECL2 G T G V R K N K T I T C Y D T T S D E Y ECL2ICL3 D L D N S ICL3ECL3 F Q T P A ECL3N-term M T E V L W P A V P N G T D A A F L A G P G S S W G N S T V A S T A A V S S S F K C A L T K T G N-termC-term K A S R R S E A N L Q S K S E D M T L N I L P E F K Q N G D T S L C-term F Q F Y Y L P A V Y I L V F I I G F L G N S V A I W M F V F H S G I S V Y M F N L A L A D F L Y V L T L P A L I F Y Y F N G D A M C K L Q R F I F H V N L Y G S I L F L T C I S A H R Y S G V V Y K K K N A I C I S V L V W L I V V V A I S P I L F Y S L R S Y F I Y S M C T T V A M F C V P L V L I L G C Y G L I V R A L I Y K P L R R K S I Y L V I I V L T V F A V S Y I P F H V M K T M N L R A R L D M C A F N D R V Y A T Y Q V T R G L A S L N S C V D P I L Y F L A G D T L S R F R R R A T R
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Residue Table


GPCRdb(A)
GPCRdb(A)
P2Y1 receptor
TM1
1x43 1.43x43 F62
TM2
2x55 2.55x55 L102
2x58 2.58x58 P105
2x59 2.59x59 A106
ECL1
23x52 23.52x52 F119
TM3
3x24 3.24x24 M123