Structure information

A1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6D9H

SPECIES

Homo sapiens

RESOLUTION

3.600

PREFERRED CHAIN

R

PUBLICATION DATE

June 20, 2018

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
adenosine V87 3.32x32 TM3 hydrophobic
adenosine T91 3.36x36 TM3 polar (hydrogen bond)
adenosine F171 45.52x52 ECL2 aromatic (face-to-face)
adenosine E172 ECL2 polar (charge-assisted hydrogen bond)
adenosine L250 6.51x51 TM6 hydrophobic
adenosine N254 6.55x55 TM6 polar (hydrogen bond)
adenosine N254 6.55x55 TM6 polar (hydrogen bond)
adenosine N254 6.55x55 TM6 polar (hydrogen bond)
adenosine H278 7.43x42 TM7 polar (hydrogen bond)

Ligands

adenosine

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

V N G P V S V L A I L V E I G I Y A A Q 1 V S L A V A D V A V G L A V I P L A I L I 2 A L L A L I S S Q T L I L V P C A V M L 3 A A V A I A G C W I L S F V V G L T P M 4 Y I L V M L L L P P L V W V F F N F Y V M Y 5 A L I L F L F A L S W L P L H I L N C I 6 I P N M A S N G H T L F I A I Y T L I 7
Download: PNG | SVG
ICL1 Q A L R ICL1ECL1 P Q T ECL1ICL2 P L R Y K M V V ICL2ECL2 W N N L S A V E R A W A A N G S M G E P V I K C E F E K V I ECL2ICL3 S A S S G ICL3ECL3 P S C H K ECL3N-term M P P S I N-termC-term I D E D L P E E R P D D C-term S A F Q A A Y I G I E V L I A L V S V P G N V L V I W A V K V N D A T F C F I V S L A V A D V A V G A L V I P L A I L I N I G Y F H T C L M V A C P V L I L T Q S S I L A L L A I A V D R Y L R V K I T P R R A A V A I A G C W I L S F V V G L T P M F G S M E Y M V Y F N F F V W V L P P L L L M V L I Y L E V F Y L I R K Q L N K K V D P Q K Y Y G K E L K I A K S L A L I L F L F A L S W L P L H I L N C I T L F C P S I L T Y I A I F L T H G N S A M N P I V Y A F R I Q K F L K H F R P P F R V T I W N D C Q P A
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
A1 receptor
TM3
3x32 3.32x32 V87
3x36 3.36x36 T91
ECL2
45x52 45.52x52 F171
TM6
6x51 6.51x51 L250
6x55 6.55x55 N254
TM7
7x42 7.43x42 H278