Structure information

OX1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6TQ7

SPECIES

Homo sapiens

RESOLUTION

2.660

PREFERRED CHAIN

A

REFERENCE

10.1021/acs.jmedchem.9b01787

PUBLICATION DATE

Jan. 1, 2020

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
SB-334867 C99 2.57x56 TM2 polar (hydrogen bond with backbone)
SB-334867 C99 2.57x56 TM2 Van der Waals
SB-334867 A102 2.60x59 TM2 Van der Waals
SB-334867 A102 2.60x59 TM2 hydrophobic
SB-334867 S103 2.61x60 TM2 polar (hydrogen bond with backbone)
SB-334867 S103 2.61x60 TM2 Van der Waals
SB-334867 W112 23.50x50 ECL1 Van der Waals
SB-334867 I122 3.28x28 TM3 Van der Waals
SB-334867 I122 3.28x28 TM3 hydrophobic
SB-334867 P123 3.29x29 TM3 hydrophobic
SB-334867 P123 3.29x29 TM3 Van der Waals
SB-334867 Q126 3.32x32 TM3 Van der Waals
SB-334867 A127 3.33x33 TM3 Van der Waals
SB-334867 A127 3.33x33 TM3 polar (hydrogen bond with backbone)
SB-334867 V130 3.36x36 TM3 Van der Waals
SB-334867 M176 4.57x57 TM4 Van der Waals
SB-334867 Q179 4.60x61 TM4 polar (hydrogen bond)
SB-334867 M183 4.64x65 TM4 Van der Waals
SB-334867 C202 45.50x50 ECL2 Van der Waals
SB-334867 C202 45.50x50 ECL2 polar (hydrogen bond with backbone)
SB-334867 F219 5.42x43 TM5 polar (hydrogen bond with backbone)
SB-334867 F219 5.42x43 TM5 Van der Waals
SB-334867 T223 5.46x461 TM5 polar (hydrogen bond)
SB-334867 Y348 7.43x42 TM7 polar (hydrogen bond)

Ligands

SB-334867

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Residue Diagrams

T N G V L A V V F V A V Y A A I L V W E 1 V N L S L A D V L V T I A C L P A S L L V 2 F S L T L V A V S V S V A Q L Y P I V K 3 A R G S I L G I W A V S L A I M V P Q 4 Y A M A M L G L P A L Y T V I F F C S H Y 5 M V V L L V F A L C Y L P I S V L N V L 6 I P N A A S N A Y V L W H S F T F C A 7
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ICL1 H H M R ICL1ECL1 S W L F ECL1ICL2 P L L F K S ICL2ECL2 E C S S V L P E L A N R T R L F S V C D E R W A D D ECL2ICL3 G T T S A L V R N W K R P S D Q L G D L E Q G L S G E P Q P R A R A ICL3ECL3 G M F R Q A S ECL3N-term M E P S A T P G A Q M G V P P G S R E P S P V P P D Y E D E F L R Y L W R D Y L Y P K Q Y N-termC-term G L G P C G S L K A P S P R S S A S H K S L S L Q S R C S I S K I S E H V V L T S V T T V L P C-term E W V L I A A Y V A V F V V A L V G N T L V C L A V W R N T V T N Y F I V N L S L A D V L V T A I C L P A S L L V D I T E G H A L C K V I P Y L Q A V S V S V A V L T L S F I A L D R W Y A I C H T A R R A R G S I L G I W A V S L A I M V P Q A A V M L Y P K I Y H S C F F I V T Y L A P L G L M A M A Y F Q I F R K L W G R Q I P F L A E V K Q M R A R R K T A K M L M V V L L V F A L C Y L P I S V L N V L K R V F D R E A V Y A C F T F S H W L V Y A N S A A N P I I Y N F L S G K F K A C L P F R E Q A F S C
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Residue Table


GPCRdb(A)
GPCRdb(A)
OX1 receptor
TM2
2x56 2.57x56 C99
2x59 2.60x59 A102
2x60 2.61x60 S103
ECL1
23x50 23.50x50 W112
TM3
3x28 3.28x28 I122
3x29 3.29x29 P123
3x32 3.32x32 Q126
3x33 3.33x33 A127
3x36 3.36x36 V130
TM4
4x57 4.57x57 M176
4x61 4.60x61 Q179
4x65 4.64x65 M183
ECL2
45x50 45.50x50 C202
TM5
5x43 5.42x43 F219
5x461 5.46x461 T223
TM7
7x42 7.43x42 Y348