Structure information

succinate receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6Z10

SPECIES

Rattus norvegicus

RESOLUTION

2.270

PREFERRED CHAIN

A

PUBLICATION DATE

Sept. 16, 2020

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL4751488 Y26 1.39x39 TM1 polar (charge-assisted hydrogen bond)
CHEMBL4751488 L75 2.60x60 TM2 hydrophobic
CHEMBL4751488 Y79 2.64x64 TM2 polar (charge-assisted hydrogen bond)
CHEMBL4751488 W84 23.50x50 ECL1 hydrophobic
CHEMBL4751488 L98 3.32x32 TM3 hydrophobic
CHEMBL4751488 C168 45.50x50 ECL2 hydrophobic
CHEMBL4751488 Y244 6.51x51 TM6 polar (hydrogen bond)
CHEMBL4751488 R276 7.39x38 TM7 polar (charge-charge)

Ligands

CHEMBL4751488

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Residue Diagrams

F N G L M G V I F E I G Y F A S L Y Y K 1 F N L S I S D L A F L C T L P M L I R S 2 F T L F L I S T Y L N A H L V Y R N S I 3 A I L I S L A V W V L V T L E V L P M 4 Y F F C M V S L P I L F G L L T L C L S Y 5 V L A V V I F S V L F T P Y H I M R N V 6 I P N V A S N L F A L P R T L I Y L C 7
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ICL1 K N W ICL1ECL1 N W T Y ECL1ICL2 P F R E H I L Q ICL2ECL2 P I E K G D S C V D Y A S S G ECL2ICL3 S Q Q ICL3ECL3 D S W P Q G ECL3N-term M A Q N L S N-termC-term T S F R L C-term C E N W L A L E N I L K K Y Y L S A F Y G I E F I V G M L G N F T V V F G Y L F C M N S S N V Y L F N L S I S D L A F L C T L P M L I R S Y A T G G D V L C I S N R Y V L H A N L Y T S I L F L T F I S I D R Y L L M K F K K E F A I L I S L A V W V L V T L E V L P M L T F I T S T N P K Y S L I Y S L C L T L L G F L I P L S V M C F F Y Y K M V V F L K K R Q A T V L S L N K P L R L V V L A V V I F S V L F T P Y H I M R N V R I A S R L C S Q K A I K C L Y I L T R P L A F L N S A V N P I F Y F L V G D H L F S Y F K F R D M K L R Q S L
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Residue Table


GPCRdb(A)
GPCRdb(A)
succinate receptor
TM1
1x39 1.39x39 Y26
TM2
2x60 2.60x60 L75
2x64 2.64x64 Y79
ECL1
23x50 23.50x50 W84
TM3
3x32 3.32x32 L98
ECL2
45x50 45.50x50 C168
TM6
6x51 6.51x51 Y244
TM7
7x38 7.39x38 R276