PDB
8JT8
Resolution
2.7 Å
Released
Feb. 28, 2024
Receptor
5-HT2A
Class
A
Species
Homo sapiens
Ligand
(R)-IHCH-7179
Function
Antagonist
Reference
10.1016/J.CELL.2024.02.034

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Ligand Amino Acid Generic Number Segment Interaction Type
(R)-IHCH-7179 W151 3.28x28 TM3 hydrophobic
(R)-IHCH-7179 D155 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(R)-IHCH-7179 V156 3.33x33 TM3 Van der Waals
(R)-IHCH-7179 S159 3.36x36 TM3 Van der Waals
(R)-IHCH-7179 T160 3.37x37 TM3 Van der Waals
(R)-IHCH-7179 L228 45.51x51 ECL2 hydrophobic
(R)-IHCH-7179 L228 45.51x51 ECL2 Van der Waals
(R)-IHCH-7179 L229 45.52x52 ECL2 Van der Waals
(R)-IHCH-7179 S242 5.46x461 TM5 Van der Waals
(R)-IHCH-7179 F243 5.47x47 TM5 aromatic (edge-to-face)
(R)-IHCH-7179 F243 5.47x47 TM5 Van der Waals
(R)-IHCH-7179 F332 6.44x44 TM6 hydrophobic
(R)-IHCH-7179 F332 6.44x44 TM6 Van der Waals
(R)-IHCH-7179 W336 6.48x48 TM6 aromatic (face-to-edge)
(R)-IHCH-7179 W336 6.48x48 TM6 Van der Waals
(R)-IHCH-7179 F339 6.51x51 TM6 aromatic (edge-to-face)
(R)-IHCH-7179 F339 6.51x51 TM6 Van der Waals
(R)-IHCH-7179 F340 6.52x52 TM6 Van der Waals
(R)-IHCH-7179 F340 6.52x52 TM6 aromatic (edge-to-face)
(R)-IHCH-7179 N343 6.55x55 TM6 Van der Waals
(R)-IHCH-7179 L362 7.35x34 TM7 hydrophobic
(R)-IHCH-7179 L362 7.35x34 TM7 Van der Waals
(R)-IHCH-7179 V366 7.39x38 TM7 hydrophobic
(R)-IHCH-7179 V366 7.39x38 TM7 Van der Waals
(R)-IHCH-7179 Y370 7.43x42 TM7 Van der Waals

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ICL1 K K L Q ICL1ECL1 Y R W P L ECL1ICL2 P I H H S R F N ICL2ECL2 D S K V F K E G S C L L A ECL2ICL3 G T R A K L A S F S F L P Q S S L S S E K L F Q R S I H R E P G S Y T G R R T ICL3ECL3 K E S C ECL3N-term M D I L C E E N T S L S S T T N S L M Q L N D D T R L Y S N D F N S G E A N T S D A F N W T V D S E N R T N L S C E G C L S P S C L S L N-termC-term Q Y K E N K K P L Q L I L V N T I P A L A Y K S S Q L Q M G Q K K N S K Q D A K T T D N D C S M V A L G K Q H S E E A S K D N S D G V N E K V S C V C-term L H L Q E K N W S A L L T A V V I I L T I A G N I L V I M A V S L E N A T N Y F L M S L A I A D M L L G F L V M P V S M L T I L Y G P S K L C A V W I Y L D V L F S T A S I M H L C A I S L D R Y V A I Q N S R T K A F L K I I A V W T I S V G I S M P I P V F G L Q D D D N F V L I G S F V S F F I P L T I M V I T Y F L T I K S L Q K E A T L C V S D L M Q S I S N E Q K A C K V L G I V F F L F V V M W C P F F I T N I M A V I C N E D V I G A L L N V F V W I G Y L S S A V N P L V Y T L F N K T F S R Y R S A Y I Q C
Helix box plot — Download: PNG | SVG I N G A I T L I I V V A T L L A S W N K 1 M S L A I A D M L L G L F V M P V S M L T 2 A C L H M I S A T S F L V D L Y I W V A 3 A F L K I I A V W T I S V G I S M P I 4 Y T I V M I T L P I F F S V F S G I L V F 5 G I V F F L F V V M W C P F F I T N I M 6 L P N V A S S L Y G I W V F V N L L A 7

GPCRdb(A)
GPCRdb(A)
5-HT2A receptor
TM3
3x28 3.28x28 W151
3x32 3.32x32 D155
3x33 3.33x33 V156
3x36 3.36x36 S159
3x37 3.37x37 T160
ECL2
45x51 45.51x51 L228
45x52 45.52x52 L229
TM5
5x461 5.46x461 S242
5x47 5.47x47 F243
TM6
6x44 6.44x44 F332
6x48 6.48x48 W336
6x51 6.51x51 F339
6x52 6.52x52 F340
6x55 6.55x55 N343
TM7
7x34 7.35x34 L362
7x38 7.39x38 V366
7x42 7.43x42 Y370