EP4 receptor - Gs

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gs

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

3.1 Å

REFERENCE

PUBLICATION DATE

Jan. 10, 2024

3D VIEW

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LIGAND INTERACTIONS

LIGANDS

ENDOGENOUS LIGANDS

thromboxane A2, PGF, PGI2, PGD2, PGE1, PGE2



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Polar ICL2 V 131 34x57 G.hns1 R 38 G.hns1.02
Van-der-waals ICL2 V 131 34x57 G.hns1 R 38 G.hns1.02
Polar ICL1 Q 49 - G.H5 L 393 G.H5.25
Hydrophobic ICL1 Q 49 - G.H5 L 393 G.H5.25
Van-der-waals ICL1 Q 49 - G.H5 L 393 G.H5.25
Hydrophobic ICL2 H 129 34x55 G.S3 V 217 G.S3.01
Polar TM6 Q 269 6x32 G.H5 E 392 G.H5.24
Van-der-waals TM6 Q 269 6x32 G.H5 E 392 G.H5.24
Hydrophobic TM6 M 270 6x33 G.H5 L 388 G.H5.20
Polar TM3 I 121 3x54 G.H5 Q 384 G.H5.16
Van-der-waals TM3 I 121 3x54 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 A 124 34x50 G.H5 R 380 G.H5.12
Polar TM5 M 213 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM5 M 213 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM1 L 42 1x57 G.H5 L 394 G.H5.26
Van-der-waals TM1 L 42 1x57 G.H5 L 394 G.H5.26
Hydrophobic ICL2 A 124 34x50 G.H5 Q 384 G.H5.16
Polar ICL2 H 129 34x55 G.S1 H 41 G.S1.02
Aromatic ICL2 H 129 34x55 G.S1 H 41 G.S1.02
Hydrophobic ICL2 H 129 34x55 G.S1 H 41 G.S1.02
Van-der-waals ICL2 H 129 34x55 G.S1 H 41 G.S1.02
Hydrophobic TM5 F 217 5x72 G.h4s6 Y 358 G.h4s6.20
Hydrophobic TM6 M 270 6x33 G.H5 Y 391 G.H5.23
Polar ICL1 T 52 - G.H5 Q 390 G.H5.22
Hydrophobic ICL1 T 52 - G.H5 Q 390 G.H5.22
Van-der-waals ICL1 T 52 - G.H5 Q 390 G.H5.22
Hydrophobic ICL2 S 128 34x54 G.H5 H 387 G.H5.19
Hydrophobic TM3 I 121 3x54 G.H5 L 388 G.H5.20
Hydrophobic ICL2 Y 125 34x51 G.S3 F 219 G.S3.03
Hydrophobic TM2 F 54 2x39 G.H5 L 394 G.H5.26
Van-der-waals TM2 F 54 2x39 G.H5 L 394 G.H5.26
Hydrophobic ICL2 Y 125 34x51 G.H5 I 383 G.H5.15
Van-der-waals ICL2 Y 125 34x51 G.H5 I 383 G.H5.15
Polar ICL2 H 129 34x55 G.hns1 R 38 G.hns1.02
Hydrophobic TM2 Y 55 2x40 G.H5 L 394 G.H5.26
Hydrophobic ICL2 S 128 34x54 G.H5 I 383 G.H5.15
Polar TM3 E 116 3x49 G.H5 Y 391 G.H5.23
Hydrophobic TM3 E 116 3x49 G.H5 Y 391 G.H5.23
Van-der-waals TM3 E 116 3x49 G.H5 Y 391 G.H5.23
Aromatic TM5 R 220 5x75 G.S6 Y 360 G.S6.02
Hydrophobic TM5 R 220 5x75 G.S6 Y 360 G.S6.02
Van-der-waals TM5 R 220 5x75 G.S6 Y 360 G.S6.02
Hydrophobic H8 R 333 8x47 G.H5 E 392 G.H5.24
Hydrophobic TM6 E 267 6x30 G.H5 L 388 G.H5.20
Polar TM3 A 120 3x53 G.H5 H 387 G.H5.19
Hydrophobic TM3 A 120 3x53 G.H5 H 387 G.H5.19
Van-der-waals TM3 A 120 3x53 G.H5 H 387 G.H5.19
Polar ICL2 Y 125 34x51 G.H5 R 380 G.H5.12
Hydrophobic ICL2 Y 125 34x51 G.H5 R 380 G.H5.12
Van-der-waals ICL2 Y 125 34x51 G.H5 R 380 G.H5.12
Polar TM3 R 117 3x50 G.H5 Y 391 G.H5.23
Aromatic TM3 R 117 3x50 G.H5 Y 391 G.H5.23
Hydrophobic TM3 R 117 3x50 G.H5 Y 391 G.H5.23
Van-der-waals TM3 R 117 3x50 G.H5 Y 391 G.H5.23
Polar H8 T 335 8x49 G.H5 E 392 G.H5.24
Hydrophobic ICL2 Y 125 34x51 G.S3 V 217 G.S3.01
Polar ICL2 Y 127 34x53 G.H5 Q 390 G.H5.22
Van-der-waals ICL2 Y 127 34x53 G.H5 Q 390 G.H5.22
Polar ICL2 H 129 34x55 G.hns1 A 39 G.hns1.03
Hydrophobic ICL2 H 129 34x55 G.hns1 A 39 G.hns1.03
Hydrophobic TM5 M 213 5x68 G.H5 Q 384 G.H5.16
Van-der-waals TM5 M 213 5x68 G.H5 Q 384 G.H5.16
Ionic TM6 E 267 6x30 G.H5 R 385 G.H5.17
Polar TM6 E 267 6x30 G.H5 R 385 G.H5.17
Van-der-waals TM6 E 267 6x30 G.H5 R 385 G.H5.17
Hydrophobic TM5 M 213 5x68 G.H5 L 388 G.H5.20
Polar TM3 E 116 3x49 G.H5 Q 390 G.H5.22
Hydrophobic H8 V 336 8x50 G.H5 L 394 G.H5.26
Van-der-waals H8 V 336 8x50 G.H5 L 394 G.H5.26
Aromatic ICL2 Y 125 34x51 G.S1 H 41 G.S1.02
Hydrophobic ICL2 Y 125 34x51 G.S1 H 41 G.S1.02
Ionic TM5 R 220 5x75 G.H5 D 381 G.H5.13
Hydrophobic TM5 L 210 5x65 G.H5 L 388 G.H5.20
Hydrophobic TM3 A 120 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 A 120 3x53 G.H5 Y 391 G.H5.23
Polar ICL2 Y 125 34x51 G.H5 F 376 G.H5.08
Aromatic ICL2 Y 125 34x51 G.H5 F 376 G.H5.08
Hydrophobic ICL2 Y 125 34x51 G.H5 F 376 G.H5.08
Van-der-waals ICL2 Y 125 34x51 G.H5 F 376 G.H5.08
Aromatic TM5 F 217 5x72 G.H5 R 385 G.H5.17
Hydrophobic TM5 F 217 5x72 G.H5 R 385 G.H5.17
Van-der-waals TM5 F 217 5x72 G.H5 R 385 G.H5.17
Hydrophobic ICL2 A 124 34x50 G.H5 I 383 G.H5.15
Hydrophobic ICL2 A 124 34x50 G.H5 H 387 G.H5.19
Van-der-waals ICL2 A 124 34x50 G.H5 H 387 G.H5.19
Aromatic TM2 F 54 2x39 G.H5 Y 391 G.H5.23
Hydrophobic TM2 F 54 2x39 G.H5 Y 391 G.H5.23
Aromatic ICL2 Y 127 34x53 G.H5 H 387 G.H5.19
Hydrophobic ICL2 Y 127 34x53 G.H5 H 387 G.H5.19
Van-der-waals ICL2 Y 127 34x53 G.H5 H 387 G.H5.19
Polar TM5 R 220 5x75 G.S6 C 359 G.S6.01