Go - FFA3 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic H8 S 280 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 S 280 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM6 V 223 6x34 G.H5 L 353 G.H5.25
Van-der-waals TM6 V 223 6x34 G.H5 L 353 G.H5.25
Hydrophobic TM6 R 219 6x30 G.H5 L 348 G.H5.20
Polar ICL2 K 124 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 K 124 34x54 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 K 124 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic TM3 V 117 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 117 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 Y 123 34x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 P 120 34x50 G.H5 T 340 G.H5.12
Hydrophobic TM2 V 50 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 V 50 2x39 G.H5 C 351 G.H5.23
Ionic TM6 R 219 6x30 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 219 6x30 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 R 219 6x30 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 L 121 34x51 G.H5 T 340 G.H5.12
Hydrophobic TM6 L 226 6x37 G.H5 L 353 G.H5.25
Polar TM3 S 116 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 S 116 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 S 116 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM6 L 227 6x38 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 211 5x65 G.H5 I 344 G.H5.16
Polar TM3 R 113 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 113 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 113 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 113 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 113 3x50 G.H5 L 353 G.H5.25
Polar TM6 R 222 6x33 G.H5 Y 354 G.H5.26
Aromatic TM6 R 222 6x33 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 222 6x33 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 222 6x33 G.H5 Y 354 G.H5.26
Van-der-waals ICL2 K 124 34x54 G.S1 V 34 G.S1.02
Hydrophobic ICL2 P 120 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 120 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM6 R 219 6x30 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 219 6x30 G.H5 Y 354 G.H5.26
Hydrophobic TM5 L 211 5x65 G.H5 L 348 G.H5.20
Polar H8 S 281 8x48 G.H5 Y 354 G.H5.26
Van-der-waals H8 S 281 8x48 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 L 121 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 121 34x51 G.S3 L 195 G.S3.01
Polar TM3 S 116 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 S 116 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 S 116 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 121 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 121 34x51 G.H5 F 336 G.H5.08
Polar ICL2 K 124 34x54 G.S1 D 33 G.S1.01
Hydrophobic ICL2 K 124 34x54 G.S1 D 33 G.S1.01
Van-der-waals ICL2 K 124 34x54 G.S1 D 33 G.S1.01
Hydrophobic ICL2 P 120 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 T 125 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic TM3 V 117 3x54 G.H5 I 344 G.H5.16
Polar TM6 R 219 6x30 G.H5 A 345 G.H5.17
Hydrophobic TM6 R 219 6x30 G.H5 A 345 G.H5.17
Van-der-waals TM6 R 219 6x30 G.H5 A 345 G.H5.17
Polar ICL2 K 124 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 K 124 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 K 124 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 L 121 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM5 L 207 5x61 G.H5 L 353 G.H5.25
Ionic TM1 R 46 1x64 G.h2s4 D 218 G.h2s4.03