G13 - GPR183 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 85.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 14.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic H8 G 314 8x49 G.H5 Q 377 G.H5.26
Van-der-waals H8 G 314 8x49 G.H5 Q 377 G.H5.26
Polar TM3 A 132 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 132 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 132 3x53 G.H5 N 370 G.H5.19
Hydrophobic ICL2 L 137 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 L 137 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM7 F 309 7x54 G.H5 L 376 G.H5.25
Hydrophobic TM3 V 133 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 133 3x54 G.H5 L 367 G.H5.16
Hydrophobic TM3 V 133 3x54 G.H5 L 371 G.H5.20
Hydrophobic TM3 V 133 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM3 V 133 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM5 K 222 5x64 G.H5 L 367 G.H5.16
Hydrophobic TM5 T 226 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 T 226 5x68 G.H5 D 364 G.H5.13
Hydrophobic TM6 K 241 6x32 G.H5 M 375 G.H5.24
Van-der-waals TM6 K 241 6x32 G.H5 M 375 G.H5.24
Hydrophobic TM5 L 223 5x65 G.H5 L 371 G.H5.20
Van-der-waals TM5 L 223 5x65 G.H5 L 371 G.H5.20
Polar H8 G 314 8x49 G.H5 L 376 G.H5.25
Hydrophobic H8 G 314 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 G 314 8x49 G.H5 L 376 G.H5.25
Hydrophobic ICL3 L 232 - G.S6 Y 343 G.S6.02
Hydrophobic ICL3 L 232 - G.S6 L 342 G.S6.01
Van-der-waals ICL3 L 232 - G.S6 L 342 G.S6.01
Polar H8 K 313 8x48 G.H5 L 376 G.H5.25
Hydrophobic TM6 A 242 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 A 242 6x33 G.H5 M 375 G.H5.24
Hydrophobic ICL2 P 136 34x50 G.H5 K 363 G.H5.12
Polar TM4 R 144 4x38 G.HN T 43 G.HN.52
Hydrophobic TM4 R 144 4x38 G.HN T 43 G.HN.52
Van-der-waals TM4 R 144 4x38 G.HN T 43 G.HN.52
Hydrophobic ICL2 P 136 34x50 G.H5 I 366 G.H5.15
Hydrophobic ICL3 S 236 - G.H5 H 368 G.H5.17
Van-der-waals ICL2 P 136 34x50 G.H5 N 370 G.H5.19
Polar H8 K 313 8x48 G.H5 M 375 G.H5.24
Hydrophobic TM5 T 226 5x68 G.H5 L 367 G.H5.16
Hydrophobic ICL2 K 141 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic TM6 A 242 6x33 G.H5 L 371 G.H5.20
Polar H8 C 312 8x47 G.H5 M 375 G.H5.24
Hydrophobic H8 C 312 8x47 G.H5 M 375 G.H5.24
Van-der-waals H8 C 312 8x47 G.H5 M 375 G.H5.24
Polar ICL3 T 233 - G.H5 D 364 G.H5.13
Hydrophobic ICL3 T 233 - G.H5 D 364 G.H5.13
Van-der-waals ICL3 T 233 - G.H5 D 364 G.H5.13
Polar TM3 R 129 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 129 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 129 3x50 G.H5 L 374 G.H5.23
Hydrophobic ICL3 L 232 - G.h4s6 P 341 G.h4s6.20
Hydrophobic ICL2 L 137 34x51 G.S3 V 216 G.S3.01
Hydrophobic TM6 T 245 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 T 245 6x36 G.H5 M 375 G.H5.24
Hydrophobic H8 K 313 8x48 G.H5 Q 377 G.H5.26
Polar H8 Y 315 8x50 G.H5 L 376 G.H5.25
Van-der-waals TM7 Y 308 7x53 G.H5 L 376 G.H5.25
Hydrophobic ICL2 L 137 34x51 G.S1 V 49 G.S1.02
Polar TM5 N 230 5x72 G.H5 D 364 G.H5.13
Van-der-waals TM5 N 230 5x72 G.H5 D 364 G.H5.13
Hydrophobic TM6 V 238 6x29 G.H5 H 368 G.H5.17
Van-der-waals TM6 V 238 6x29 G.H5 H 368 G.H5.17
Hydrophobic ICL2 L 137 34x51 G.H5 F 359 G.H5.08
Hydrophobic ICL2 K 141 34x55 G.HN T 43 G.HN.52
Van-der-waals ICL2 K 141 34x55 G.HN T 43 G.HN.52
Hydrophobic TM6 V 238 6x29 G.H5 L 371 G.H5.20
Polar H8 C 312 8x47 G.H5 L 376 G.H5.25
Hydrophobic H8 C 312 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 C 312 8x47 G.H5 L 376 G.H5.25
Hydrophobic TM5 N 230 5x72 G.S6 Y 343 G.S6.02
Van-der-waals TM5 N 230 5x72 G.S6 Y 343 G.S6.02
Hydrophobic TM3 A 132 3x53 G.H5 L 374 G.H5.23