Gt1 - GPR63 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 73.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.3
PAE mean: 25.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar C-term P 406 - G.S3 R 193 G.S3.04
Hydrophobic C-term P 406 - G.S3 R 193 G.S3.04
Van-der-waals C-term P 406 - G.S3 R 193 G.S3.04
Hydrophobic C-term C 412 - G.H2 H 209 G.H2.09
Hydrophobic TM6 F 308 6x29 G.H5 F 350 G.H5.26
Van-der-waals TM6 F 308 6x29 G.H5 F 350 G.H5.26
Hydrophobic TM2 N 117 2x40 G.H5 G 348 G.H5.24
Polar C-term Y 410 - G.H2 H 209 G.H2.09
Aromatic C-term Y 410 - G.H2 H 209 G.H2.09
Hydrophobic C-term Y 410 - G.H2 H 209 G.H2.09
Van-der-waals C-term Y 410 - G.H2 H 209 G.H2.09
Ionic ICL2 R 186 - G.H5 D 333 G.H5.09
Polar ICL2 R 186 - G.H5 D 333 G.H5.09
Hydrophobic ICL2 R 186 - G.H5 D 333 G.H5.09
Van-der-waals ICL2 R 186 - G.H5 D 333 G.H5.09
Polar C-term R 402 - G.H3 Y 254 G.H3.17
Hydrophobic C-term H 399 - G.h3s5 T 257 G.h3s5.02
Van-der-waals C-term H 399 - G.h3s5 T 257 G.h3s5.02
Hydrophobic TM3 I 183 3x54 G.H5 L 344 G.H5.20
Van-der-waals TM6 I 304 6x25 G.h4s6 E 314 G.h4s6.12
Ionic C-term R 405 - G.h2s4 E 212 G.h2s4.02
Polar C-term R 405 - G.h2s4 E 212 G.h2s4.02
Hydrophobic C-term R 405 - G.h2s4 E 212 G.h2s4.02
Van-der-waals C-term R 405 - G.h2s4 E 212 G.h2s4.02
Hydrophobic TM6 F 308 6x29 G.H5 E 342 G.H5.18
Van-der-waals TM6 F 308 6x29 G.H5 E 342 G.H5.18
Ionic H8 K 377 8x49 G.H5 D 346 G.H5.22
Polar H8 K 377 8x49 G.H5 D 346 G.H5.22
Hydrophobic H8 K 377 8x49 G.H5 D 346 G.H5.22
Van-der-waals H8 K 377 8x49 G.H5 D 346 G.H5.22
Aromatic TM5 Y 279 5x75 G.H5 F 330 G.H5.06
Hydrophobic TM5 Y 279 5x75 G.H5 F 330 G.H5.06
Van-der-waals TM5 Y 279 5x75 G.H5 F 330 G.H5.06
Hydrophobic TM6 F 308 6x29 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM6 F 308 6x29 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM3 R 179 3x50 G.H5 L 344 G.H5.20
Van-der-waals TM3 R 179 3x50 G.H5 L 344 G.H5.20
Hydrophobic TM6 F 308 6x29 G.H5 K 341 G.H5.17
Van-der-waals TM6 F 308 6x29 G.H5 K 341 G.H5.17
Hydrophobic C-term C 412 - G.H2 K 206 G.H2.06
Van-der-waals C-term C 412 - G.H2 K 206 G.H2.06
Polar TM4 P 192 4x39 G.HN E 24 G.HN.52
Hydrophobic TM4 P 192 4x39 G.HN E 24 G.HN.52
Van-der-waals TM4 P 192 4x39 G.HN E 24 G.HN.52
Hydrophobic TM3 I 182 3x53 G.H5 L 344 G.H5.20
Hydrophobic C-term Y 410 - G.S2 I 180 G.S2.01
Polar ICL2 D 188 - G.s2s3 D 189 G.s2s3.02
Hydrophobic ICL2 D 188 - G.s2s3 D 189 G.s2s3.02
Van-der-waals ICL2 D 188 - G.s2s3 D 189 G.s2s3.02
Polar C-term R 402 - G.h2s4 V 214 G.h2s4.04
Hydrophobic C-term R 402 - G.h2s4 V 214 G.h2s4.04
Van-der-waals C-term R 402 - G.h2s4 V 214 G.h2s4.04
Hydrophobic TM3 I 182 3x53 G.H5 I 340 G.H5.16
Van-der-waals TM3 I 182 3x53 G.H5 I 340 G.H5.16
Hydrophobic ICL2 D 188 - G.S3 L 190 G.S3.01
Van-der-waals ICL2 D 188 - G.S3 L 190 G.S3.01
Hydrophobic TM6 R 311 6x32 G.H5 K 345 G.H5.21
Van-der-waals TM6 R 311 6x32 G.H5 K 345 G.H5.21
Polar TM2 N 117 2x40 G.H5 D 346 G.H5.22
Polar ICL2 D 188 - G.s2s3 K 188 G.s2s3.01
Polar TM2 S 114 2x37 G.H5 C 347 G.H5.23
Hydrophobic TM2 S 114 2x37 G.H5 C 347 G.H5.23
Van-der-waals TM2 S 114 2x37 G.H5 C 347 G.H5.23
Hydrophobic TM2 I 116 2x39 G.H5 L 349 G.H5.25
Van-der-waals TM2 I 116 2x39 G.H5 L 349 G.H5.25
Polar TM6 R 311 6x32 G.h4s6 D 311 G.h4s6.09
Hydrophobic TM3 R 179 3x50 G.H5 L 349 G.H5.25
Van-der-waals TM3 R 179 3x50 G.H5 L 349 G.H5.25
Polar TM4 Y 193 4x40 G.HN E 24 G.HN.52
Hydrophobic TM4 Y 193 4x40 G.HN E 24 G.HN.52
Van-der-waals TM4 Y 193 4x40 G.HN E 24 G.HN.52
Polar C-term R 402 - G.h3s5 T 257 G.h3s5.02
Polar C-term T 400 - G.H3 R 253 G.H3.16
Hydrophobic C-term T 400 - G.H3 R 253 G.H3.16
Van-der-waals C-term T 400 - G.H3 R 253 G.H3.16
Hydrophobic ICL3 M 302 - G.H4 K 300 G.H4.12
Van-der-waals ICL3 M 302 - G.H4 K 300 G.H4.12
Hydrophobic TM6 A 312 6x33 G.H5 L 349 G.H5.25
Van-der-waals TM6 A 312 6x33 G.H5 L 349 G.H5.25
Polar TM6 F 308 6x29 G.H5 K 345 G.H5.21
Aromatic TM6 F 308 6x29 G.H5 K 345 G.H5.21
Hydrophobic TM6 F 308 6x29 G.H5 K 345 G.H5.21
Van-der-waals TM6 F 308 6x29 G.H5 K 345 G.H5.21
Hydrophobic C-term R 403 - G.h2s4 E 212 G.h2s4.02
Van-der-waals C-term R 403 - G.h2s4 E 212 G.h2s4.02
Hydrophobic TM2 I 116 2x39 G.H5 L 344 G.H5.20
Polar C-term R 403 - G.h2s4 G 213 G.h2s4.03
Van-der-waals C-term R 403 - G.h2s4 G 213 G.h2s4.03
Hydrophobic TM4 Y 193 4x40 G.HN K 20 G.HN.48
Hydrophobic TM6 R 311 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 R 311 6x32 G.H5 F 350 G.H5.26
Hydrophobic H8 I 375 8x47 G.H5 G 348 G.H5.24
Van-der-waals H8 I 375 8x47 G.H5 G 348 G.H5.24
Polar ICL2 K 189 - G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 K 189 - G.hns1 R 28 G.hns1.03
Hydrophobic TM4 N 191 4x38 G.hns1 R 28 G.hns1.03
Van-der-waals TM4 N 191 4x38 G.hns1 R 28 G.hns1.03
Hydrophobic TM2 I 116 2x39 G.H5 G 348 G.H5.24
Hydrophobic TM6 I 316 6x37 G.H5 L 349 G.H5.25
Hydrophobic ICL3 M 302 - G.H4 L 304 G.H4.16
Van-der-waals ICL3 M 302 - G.H4 L 304 G.H4.16
Ionic ICL2 R 186 - G.H5 D 337 G.H5.13
Polar ICL2 R 186 - G.H5 D 337 G.H5.13
Hydrophobic ICL2 R 186 - G.H5 D 337 G.H5.13
Van-der-waals ICL2 R 186 - G.H5 D 337 G.H5.13
Polar C-term R 402 - G.h2s4 T 215 G.h2s4.05
Hydrophobic C-term I 404 - G.h2s4 G 213 G.h2s4.03
Van-der-waals C-term I 404 - G.h2s4 G 213 G.h2s4.03
Hydrophobic TM6 K 309 6x30 G.H5 K 341 G.H5.17
Van-der-waals TM6 K 309 6x30 G.H5 K 341 G.H5.17
Polar C-term I 404 - G.h2s4 E 212 G.h2s4.02
Hydrophobic C-term I 404 - G.h2s4 E 212 G.h2s4.02
Van-der-waals C-term I 404 - G.h2s4 E 212 G.h2s4.02
Polar TM4 N 191 4x38 G.HN E 24 G.HN.52
Hydrophobic TM4 N 191 4x38 G.HN E 24 G.HN.52
Van-der-waals TM4 N 191 4x38 G.HN E 24 G.HN.52
Hydrophobic ICL2 R 186 - G.s2s3 K 188 G.s2s3.01
Van-der-waals ICL2 R 186 - G.s2s3 K 188 G.s2s3.01
Hydrophobic TM6 A 312 6x33 G.H5 F 350 G.H5.26
Van-der-waals TM6 A 312 6x33 G.H5 F 350 G.H5.26
Polar TM2 N 117 2x40 G.H5 C 347 G.H5.23
Hydrophobic TM2 N 117 2x40 G.H5 C 347 G.H5.23
Van-der-waals TM2 N 117 2x40 G.H5 C 347 G.H5.23
Hydrophobic TM3 I 175 3x46 G.H5 L 349 G.H5.25
Van-der-waals TM3 I 175 3x46 G.H5 L 349 G.H5.25
Hydrophobic TM6 K 309 6x30 G.H5 F 350 G.H5.26
Van-der-waals TM6 K 309 6x30 G.H5 F 350 G.H5.26
Hydrophobic TM2 I 116 2x39 G.H5 C 347 G.H5.23
Van-der-waals TM2 I 116 2x39 G.H5 C 347 G.H5.23
Polar TM6 D 305 6x26 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM6 D 305 6x26 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM6 D 305 6x26 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM3 I 183 3x54 G.H5 F 350 G.H5.26
Hydrophobic TM2 L 120 2x43 G.H5 G 348 G.H5.24
Van-der-waals TM2 L 120 2x43 G.H5 G 348 G.H5.24
Hydrophobic TM4 P 192 4x39 G.hns1 A 27 G.hns1.02
Van-der-waals TM4 R 194 4x41 G.hns1 R 28 G.hns1.03
Polar ICL2 D 188 - G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 D 188 - G.hns1 R 28 G.hns1.03
Polar C-term R 402 - G.h3s5 T 258 G.h3s5.03
Hydrophobic C-term R 402 - G.h3s5 T 258 G.h3s5.03
Van-der-waals C-term R 402 - G.h3s5 T 258 G.h3s5.03
Polar C-term T 400 - G.H3 Y 254 G.H3.17
Hydrophobic C-term T 400 - G.H3 Y 254 G.H3.17
Van-der-waals C-term T 400 - G.H3 Y 254 G.H3.17
Hydrophobic H8 K 376 8x48 G.h4s6 V 312 G.h4s6.10
Van-der-waals H8 K 376 8x48 G.h4s6 V 312 G.h4s6.10