G13 - MCH1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 74.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.6
PAE mean: 15.7


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 P 217 34x50 G.H5 N 370 G.H5.19
Polar TM6 R 319 6x29 G.H5 Q 377 G.H5.26
Hydrophobic TM6 R 319 6x29 G.H5 Q 377 G.H5.26
Van-der-waals TM6 R 319 6x29 G.H5 Q 377 G.H5.26
Hydrophobic TM6 R 319 6x29 G.H5 L 371 G.H5.20
Hydrophobic TM2 P 147 2x39 G.H5 L 376 G.H5.25
Hydrophobic ICL2 I 218 34x51 G.H5 F 359 G.H5.08
Hydrophobic TM5 M 304 5x65 G.H5 L 371 G.H5.20
Hydrophobic TM2 D 148 2x40 G.H5 L 376 G.H5.25
Van-der-waals TM2 D 148 2x40 G.H5 L 376 G.H5.25
Hydrophobic TM6 Q 313 6x23 G.h4s6 P 341 G.h4s6.20
Van-der-waals TM6 Q 313 6x23 G.h4s6 P 341 G.h4s6.20
Polar TM3 A 213 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 213 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 213 3x53 G.H5 N 370 G.H5.19
Polar H8 T 386 8x49 G.H5 L 376 G.H5.25
Hydrophobic H8 T 386 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 T 386 8x49 G.H5 L 376 G.H5.25
Polar TM2 N 145 2x37 G.H5 Q 373 G.H5.22
Hydrophobic TM2 N 145 2x37 G.H5 Q 373 G.H5.22
Polar TM1 K 137 1x60 G.H5 Q 377 G.H5.26
Hydrophobic TM1 K 137 1x60 G.H5 Q 377 G.H5.26
Van-der-waals TM1 K 137 1x60 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 P 217 34x50 G.H5 L 367 G.H5.16
Hydrophobic H8 C 384 8x47 G.H5 M 375 G.H5.24
Van-der-waals H8 C 384 8x47 G.H5 M 375 G.H5.24
Polar ICL2 R 224 34x57 G.H5 Q 373 G.H5.22
Hydrophobic TM3 R 210 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 210 3x50 G.H5 L 374 G.H5.23
Polar ICL2 T 221 34x54 G.hns1 K 46 G.hns1.02
Polar H8 T 386 8x49 G.H5 M 375 G.H5.24
Van-der-waals H8 T 386 8x49 G.H5 M 375 G.H5.24
Hydrophobic TM2 P 147 2x39 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 I 218 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM3 A 213 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM2 P 147 2x39 G.H5 L 374 G.H5.23
Hydrophobic ICL2 I 218 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 I 218 34x51 G.S3 V 216 G.S3.01
Hydrophobic TM4 K 225 4x38 G.hns1 K 46 G.hns1.02
Van-der-waals TM4 K 225 4x38 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 T 320 6x30 G.H5 L 371 G.H5.20
Van-der-waals TM6 T 320 6x30 G.H5 L 371 G.H5.20
Hydrophobic TM7 L 383 7x56 G.H5 M 375 G.H5.24
Van-der-waals TM7 L 383 7x56 G.H5 M 375 G.H5.24
Hydrophobic TM2 I 151 2x43 G.H5 L 376 G.H5.25
Van-der-waals TM2 I 151 2x43 G.H5 L 376 G.H5.25
Hydrophobic TM3 T 214 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 T 214 3x54 G.H5 L 367 G.H5.16
Polar H8 R 390 8x53 G.H5 Q 377 G.H5.26
Hydrophobic H8 R 390 8x53 G.H5 Q 377 G.H5.26
Van-der-waals H8 R 390 8x53 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 K 222 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 K 222 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic TM6 R 319 6x29 G.H5 K 372 G.H5.21
Van-der-waals TM6 R 319 6x29 G.H5 K 372 G.H5.21
Hydrophobic ICL2 I 218 34x51 G.S1 V 49 G.S1.02
Polar H8 R 390 8x53 G.H5 L 376 G.H5.25
Hydrophobic TM6 I 316 6x26 G.H5 D 364 G.H5.13
Van-der-waals TM6 I 316 6x26 G.H5 D 364 G.H5.13
Hydrophobic H8 F 387 8x50 G.H5 L 376 G.H5.25
Van-der-waals H8 F 387 8x50 G.H5 L 376 G.H5.25
Hydrophobic TM6 I 316 6x26 G.H5 L 371 G.H5.20
Hydrophobic TM6 V 323 6x33 G.H5 L 371 G.H5.20
Van-der-waals TM6 V 323 6x33 G.H5 L 371 G.H5.20
Polar ICL2 K 222 34x55 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 K 222 34x55 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 K 222 34x55 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 P 217 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 217 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL2 I 218 34x51 G.H5 V 362 G.H5.11
Polar TM6 R 319 6x29 G.H5 H 368 G.H5.17
Aromatic TM6 R 319 6x29 G.H5 H 368 G.H5.17
Hydrophobic TM6 R 319 6x29 G.H5 H 368 G.H5.17
Van-der-waals TM6 R 319 6x29 G.H5 H 368 G.H5.17
Hydrophobic ICL2 I 218 34x51 G.H5 K 363 G.H5.12
Van-der-waals ICL2 I 218 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM3 T 214 3x54 G.H5 L 374 G.H5.23
Hydrophobic ICL2 T 221 34x54 G.H5 I 366 G.H5.15
Hydrophobic TM6 V 323 6x33 G.H5 L 374 G.H5.23
Hydrophobic TM6 I 316 6x26 G.H5 H 368 G.H5.17
Van-der-waals TM6 I 316 6x26 G.H5 H 368 G.H5.17
Hydrophobic TM6 R 322 6x32 G.H5 M 375 G.H5.24
Van-der-waals TM6 R 322 6x32 G.H5 M 375 G.H5.24
Hydrophobic H8 C 384 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 C 384 8x47 G.H5 L 376 G.H5.25
Polar TM1 K 137 1x60 G.H5 L 376 G.H5.25
Van-der-waals TM1 K 137 1x60 G.H5 L 376 G.H5.25
Polar ICL2 R 224 34x57 G.H5 N 370 G.H5.19
Van-der-waals ICL2 R 224 34x57 G.H5 N 370 G.H5.19
Hydrophobic ICL2 P 217 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 217 34x50 G.H5 I 366 G.H5.15
Polar H8 T 386 8x49 G.H5 Q 377 G.H5.26
Hydrophobic H8 T 386 8x49 G.H5 Q 377 G.H5.26
Van-der-waals H8 T 386 8x49 G.H5 Q 377 G.H5.26
Hydrophobic TM6 V 323 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 V 323 6x33 G.H5 M 375 G.H5.24
Hydrophobic TM3 T 214 3x54 G.H5 L 371 G.H5.20