GPR42 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active

VERSION

2020-09-02

MODEL

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

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MAIN TEMPLATE

μ receptor (sequence similarity: 42%) PDB: 5C1M

TEMPLATES

5C1M (μ receptor)
5VBL (apelin receptor)
5NDD (PAR2)
5TZY (FFA1 receptor)
5WB1 (US28)
5LWE (CCR9)
None
Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 75.5 14.3 10.2
Side-chains 19.0 63.9 17.0

Number of backbone templates: 6
Number of rotamer templates: 44

Segment Seq.num. AA GPCRdb# Backbone PDB Rotamer PDB
N-term 6 D μ receptor 5C1M μ receptor 5C1M
N-term 7 Q μ receptor 5C1M μ receptor 5C1M
N-term 8 S μ receptor 5C1M μ receptor 5C1M
N-term 9 Y μ receptor 5C1M μ receptor 5C1M
N-term 10 F μ receptor 5C1M μ receptor 5C1M
TM1 11 S 1.29x29 μ receptor 5C1M A1 receptor 6D9H
TM1 12 G 1.30x30 μ receptor 5C1M NOP receptor 5DHG
TM1 13 N 1.31x31 μ receptor 5C1M CXCR4 3ODU
TM1 14 H 1.32x32 μ receptor 5C1M - -
TM1 15 W 1.33x33 μ receptor 5C1M CCR7 6QZH
TM1 16 F 1.34x34 μ receptor 5C1M CCR6 6WWZ
TM1 17 V 1.35x35 μ receptor 5C1M CCR6 6WWZ
TM1 18 F 1.36x36 μ receptor 5C1M FFA1 receptor 5TZY
TM1 19 S 1.37x37 μ receptor 5C1M PAR1 3VW7
TM1 20 V 1.38x38 μ receptor 5C1M κ receptor 6B73
TM1 21 Y 1.39x39 μ receptor 5C1M μ receptor 5C1M
TM1 22 L 1.40x40 μ receptor 5C1M NTS1 receptor 6OSA
TM1 23 L 1.41x41 μ receptor 5C1M CCR6 6WWZ
TM1 24 T 1.42x42 μ receptor 5C1M FPR2/ALX 6LW5
TM1 25 F 1.43x43 μ receptor 5C1M κ receptor 6B73
TM1 26 L 1.44x44 μ receptor 5C1M US28 5WB1
TM1 27 V 1.45x45 μ receptor 5C1M μ receptor 5C1M
TM1 28 G 1.46x46 μ receptor 5C1M μ receptor 5C1M
TM1 29 L 1.47x47 μ receptor 5C1M μ receptor 5C1M
TM1 30 P 1.48x48 μ receptor 5C1M Rhodopsin 4ZWJ
TM1 31 L 1.49x49 μ receptor 5C1M PAR1 3VW7
TM1 32 N 1.50x50 μ receptor 5C1M μ receptor 5C1M
TM1 33 L 1.51x51 μ receptor 5C1M M1 receptor 6OIJ
TM1 34 L 1.52x52 μ receptor 5C1M μ receptor 5C1M
TM1 35 A 1.53x53 μ receptor 5C1M EP3 receptor 6M9T
TM1 36 L 1.54x54 μ receptor 5C1M NTS1 receptor 6OSA
TM1 37 V 1.55x55 μ receptor 5C1M M2 receptor 4MQT
TM1 38 V 1.56x56 μ receptor 5C1M μ receptor 5C1M
TM1 39 F 1.57x57 μ receptor 5C1M AT2 receptor 6JOD
TM1 40 V 1.58x58 μ receptor 5C1M μ receptor 5C1M
TM1 41 G 1.59x59 μ receptor 5C1M TP receptor 6IIV
TM1 42 K 1.60x60 μ receptor 5C1M NTS1 receptor 4XES
ICL1 43 L - - - -
ICL1 44 R apelin receptor 5VBL apelin receptor 5VBL
ICL1 45 C apelin receptor 5VBL - -
ICL1 46 R apelin receptor 5VBL - -
ICL1 47 P - - - -
TM2 48 V 2.37x37 μ receptor 5C1M - -
TM2 49 A 2.38x38 μ receptor 5C1M μ receptor 5C1M
TM2 50 V 2.39x39 μ receptor 5C1M NTS1 receptor 6OSA
TM2 51 D 2.40x40 μ receptor 5C1M CCR6 6WWZ
TM2 52 V 2.41x41 μ receptor 5C1M CCR6 6WWZ
TM2 53 L 2.42x42 μ receptor 5C1M D2 receptor 6VMS
TM2 54 L 2.43x43 μ receptor 5C1M CCR6 6WWZ
TM2 55 L 2.44x44 μ receptor 5C1M CCR6 6WWZ
TM2 56 N 2.45x45 μ receptor 5C1M μ receptor 5C1M
TM2 57 L 2.46x46 μ receptor 5C1M μ receptor 5C1M
TM2 58 T 2.47x47 μ receptor 5C1M PAF receptor 5ZKQ
TM2 59 A 2.48x48 μ receptor 5C1M US28 5WB1
TM2 60 S 2.49x49 μ receptor 5C1M NTS1 receptor 6OSA
TM2 61 D 2.50x50 μ receptor 5C1M μ receptor 5C1M
TM2 62 L 2.51x51 μ receptor 5C1M AT2 receptor 6JOD
TM2 63 L 2.52x52 μ receptor 5C1M μ receptor 5C1M
TM2 64 L 2.53x53 μ receptor 5C1M AT2 receptor 6JOD
TM2 65 L 2.54x54 μ receptor 5C1M AT2 receptor 6JOD
TM2 66 L 2.55x55 μ receptor 5C1M CCR6 6WWZ
TM2 67 F 2.56x56 μ receptor 5C1M NK1 receptor 6HLP
TM2 68 L 2.57x57 μ receptor 5C1M μ receptor 5C1M
TM2 69 P 2.58x58 μ receptor 5C1M μ receptor 5C1M
TM2 70 F 2.59x59 μ receptor 5C1M μ receptor 5C1M
TM2 71 R 2.60x60 μ receptor 5C1M CysLT2 receptor 6RZ6
TM2 72 M 2.61x61 μ receptor 5C1M US28 5WB1
TM2 73 V 2.62x62 μ receptor 5C1M μ receptor 5C1M
TM2 74 E 2.63x63 μ receptor 5C1M FFA1 receptor 5TZY
TM2 75 A 2.64x64 μ receptor 5C1M FFA1 receptor 5TZY
TM2 76 A 2.65x65 μ receptor 5C1M CCR6 6WWZ
TM2 77 N 2.66x66 μ receptor 5C1M P2Y1 receptor 4XNW
ECL1 78 G - - - -
ECL1 79 M PAR2 5NDD - -
ECL1 80 H 23.49x49 PAR2 5NDD M1 receptor 6OIJ
ECL1 81 W 23.50x50 PAR2 5NDD PAR2 5NDD
ECL1 82 P 23.51x51 PAR2 5NDD μ receptor 5C1M
ECL1 83 L 23.52x52 - - - -
TM3 84 P 3.21x21 μ receptor 5C1M 5-HT2C receptor 6BQG
TM3 85 F 3.22x22 μ receptor 5C1M A1 receptor 6D9H
TM3 86 I 3.23x23 μ receptor 5C1M μ receptor 5C1M
TM3 87 L 3.24x24 μ receptor 5C1M μ receptor 5C1M
TM3 88 C 3.25x25 μ receptor 5C1M μ receptor 5C1M
TM3 89 P 3.26x26 μ receptor 5C1M 5-HT2C receptor 6BQG
TM3 90 L 3.27x27 μ receptor 5C1M CCR6 6WWZ
TM3 91 S 3.28x28 μ receptor 5C1M LPA6 receptor 5XSZ
TM3 92 G 3.29x29 μ receptor 5C1M AT2 receptor 6JOD
TM3 93 F 3.30x30 μ receptor 5C1M NTS1 receptor 6OSA
TM3 94 I 3.31x31 μ receptor 5C1M μ receptor 5C1M
TM3 95 F 3.32x32 μ receptor 5C1M US28 5WB1
TM3 96 F 3.33x33 μ receptor 5C1M FFA1 receptor 5TZY
TM3 97 T 3.34x34 μ receptor 5C1M 5-HT1B receptor 6G79
TM3 98 T 3.35x35 μ receptor 5C1M CB2 receptor 6PT0
TM3 99 I 3.36x36 μ receptor 5C1M Y1 receptor 5ZBH
TM3 100 Y 3.37x37 μ receptor 5C1M AT1 receptor 6OS2
TM3 101 L 3.38x38 μ receptor 5C1M - -
TM3 102 T 3.39x39 μ receptor 5C1M NTS1 receptor 6OSA
TM3 103 A 3.40x40 μ receptor 5C1M NTS1 receptor 6OSA
TM3 104 L 3.41x41 μ receptor 5C1M CCR6 6WWZ
TM3 105 F 3.42x42 μ receptor 5C1M AT2 receptor 6JOD
TM3 106 L 3.43x43 μ receptor 5C1M μ receptor 5C1M
TM3 107 A 3.44x44 μ receptor 5C1M NTS1 receptor 6OSA
TM3 108 A 3.45x45 μ receptor 5C1M D2 receptor 6VMS
TM3 109 V 3.46x46 μ receptor 5C1M NK1 receptor 6HLP
TM3 110 S 3.47x47 μ receptor 5C1M μ receptor 5C1M
TM3 111 I 3.48x48 μ receptor 5C1M D2 receptor 6VMS
TM3 112 E 3.49x49 μ receptor 5C1M NTS1 receptor 6OSA
TM3 113 R 3.50x50 μ receptor 5C1M μ receptor 5C1M
TM3 114 F 3.51x51 μ receptor 5C1M PAR1 3VW7
TM3 115 L 3.52x52 μ receptor 5C1M AT1 receptor 6OS2
TM3 116 S 3.53x53 μ receptor 5C1M AT2 receptor 6JOD
TM3 117 V 3.54x54 μ receptor 5C1M μ receptor 5C1M
TM3 118 A 3.55x55 μ receptor 5C1M D2 receptor 6VMS
TM3 119 H 3.56x56 μ receptor 5C1M μ receptor 5C1M
ICL2 120 P 34.50x50 - - - -
ICL2 121 L 34.51x51 FFA1 receptor 5TZY FFA1 receptor 5TZY
ICL2 122 W 34.52x52 FFA1 receptor 5TZY FPR2/ALX 6LW5
ICL2 123 Y 34.53x53 FFA1 receptor 5TZY FFA1 receptor 5TZY
ICL2 124 K 34.54x54 FFA1 receptor 5TZY NTS1 receptor 6OSA
ICL2 125 T 34.55x55 FFA1 receptor 5TZY NTS1 receptor 6OSA
ICL2 126 R 34.56x56 FFA1 receptor 5TZY AT1 receptor 6OS2
ICL2 127 P 34.57x57 - - - -
TM4 128 R 4.38x38 μ receptor 5C1M FFA1 receptor 5TZY
TM4 129 L 4.39x39 μ receptor 5C1M CCR6 6WWZ
TM4 130 G 4.40x40 μ receptor 5C1M CB2 receptor 6PT0
TM4 131 Q 4.41x41 μ receptor 5C1M AT2 receptor 6JOD
TM4 132 A 4.42x42 μ receptor 5C1M μ receptor 5C1M
TM4 133 G 4.43x43 μ receptor 5C1M M2 receptor 4MQT
TM4 134 L 4.44x44 μ receptor 5C1M US28 5WB1
TM4 135 V 4.45x45 μ receptor 5C1M μ receptor 5C1M
TM4 136 S 4.46x46 μ receptor 5C1M US28 5WB1
TM4 137 V 4.47x47 μ receptor 5C1M μ receptor 5C1M
TM4 138 A 4.48x48 μ receptor 5C1M NTS1 receptor 6OSA
TM4 139 C 4.49x49 μ receptor 5C1M A2A receptor 4UHR
TM4 140 W 4.50x50 μ receptor 5C1M μ receptor 5C1M
TM4 141 L 4.51x51 μ receptor 5C1M κ receptor 6B73
TM4 142 L 4.52x52 μ receptor 5C1M μ receptor 5C1M
TM4 143 A 4.53x53 μ receptor 5C1M AT2 receptor 6JOD
TM4 144 S 4.54x54 μ receptor 5C1M μ receptor 5C1M
TM4 145 A 4.55x55 μ receptor 5C1M μ receptor 5C1M
TM4 146 H 4.56x56 μ receptor 5C1M FFA1 receptor 5TZY
TM4 147 C 4.57x57 μ receptor 5C1M CCR9 5LWE
TM4 148 S 4.58x58 μ receptor 5C1M CCR6 6WWZ
TM4 149 V 4.59x59 μ receptor 5C1M 5-HT2C receptor 6BQG
TM4 150 V 4.60x60 μ receptor 5C1M μ receptor 5C1M
TM4 151 Y 4.61x61 μ receptor 5C1M DP2 receptor 6D27
TM4 152 V 4.62x62 μ receptor 5C1M κ receptor 6B73
TM4 153 I 4.63x63 μ receptor 5C1M AT1 receptor 6OS2
ECL2 154 E - - - -
ECL2 155 F - - - -
ECL2 156 S - - - -
ECL2 157 G - - - -
ECL2 158 D - - - -
ECL2 159 I - - - -
ECL2 160 S - - - -
ECL2 161 H - - - -
ECL2 162 S - - - -
ECL2 163 Q - - - -
ECL2 164 G - - - -
ECL2 165 T - - - -
ECL2 166 N - - - -
ECL2 167 G - - - -
ECL2 168 T - - - -
ECL2 169 C 45.50x50 μ receptor 5C1M μ receptor 5C1M
ECL2 170 Y 45.51x51 μ receptor 5C1M M2 receptor 4MQT
ECL2 171 L 45.52x52 μ receptor 5C1M μ receptor 5C1M
ECL2 172 E - - - -
ECL2 173 F PAR2 5NDD - -
ECL2 174 W PAR2 5NDD - -
ECL2 175 K PAR2 5NDD - -
ECL2 176 D PAR2 5NDD - -
ECL2 177 Q - - - -
TM5 178 L 5.32x33 μ receptor 5C1M P2Y1 receptor 4XNW
TM5 179 A 5.33x34 μ receptor 5C1M NTS1 receptor 6OSA
TM5 180 I 5.34x35 μ receptor 5C1M - -
TM5 181 L 5.35x36 μ receptor 5C1M FPR2/ALX 6LW5
TM5 182 L 5.36x37 μ receptor 5C1M κ receptor 6B73
TM5 183 P 5.37x38 μ receptor 5C1M FFA1 receptor 5TZY
TM5 184 V 5.38x39 μ receptor 5C1M NTS1 receptor 6OSA
TM5 185 R 5.39x40 μ receptor 5C1M FFA1 receptor 5TZY
TM5 186 L 5.40x41 μ receptor 5C1M AT2 receptor 6JOD
TM5 187 E 5.41x42 μ receptor 5C1M US28 5WB1
TM5 188 M 5.42x43 μ receptor 5C1M Rhodopsin 4ZWJ
TM5 189 A 5.43x44 μ receptor 5C1M M2 receptor 4MQT
TM5 190 V 5.44x45 μ receptor 5C1M FPR2/ALX 6LW5
TM5 191 V 5.45x46 μ receptor 5C1M D2 receptor 6VMS
TM5 192 L 5.46x461 μ receptor 5C1M GPR52 6LI3
TM5 193 F 5.47x47 μ receptor 5C1M μ receptor 5C1M
TM5 194 V 5.48x48 μ receptor 5C1M κ receptor 6B73
TM5 195 V 5.49x49 μ receptor 5C1M D2 receptor 6VMS
TM5 196 P 5.50x50 μ receptor 5C1M μ receptor 5C1M
TM5 197 L 5.51x51 μ receptor 5C1M AT2 receptor 6JOD
TM5 198 I 5.52x52 μ receptor 5C1M AT2 receptor 6JOD
TM5 199 I 5.53x53 μ receptor 5C1M μ receptor 5C1M
TM5 200 T 5.54x54 μ receptor 5C1M EP3 receptor 6M9T
TM5 201 S 5.55x55 μ receptor 5C1M US28 5WB1
TM5 202 Y 5.56x56 μ receptor 5C1M US28 5WB1
TM5 203 C 5.57x57 μ receptor 5C1M μ receptor 5C1M
TM5 204 Y 5.58x58 μ receptor 5C1M μ receptor 5C1M
TM5 205 S 5.59x59 μ receptor 5C1M β2-adrenoceptor 3SN6
TM5 206 R 5.60x60 μ receptor 5C1M US28 5WB1
TM5 207 L 5.61x61 μ receptor 5C1M Rhodopsin 4ZWJ
TM5 208 V 5.62x62 μ receptor 5C1M CCR6 6WWZ
TM5 209 W 5.63x63 μ receptor 5C1M CB1 receptor 6N4B
TM5 210 I 5.64x64 μ receptor 5C1M US28 5WB1
TM5 211 L 5.65x65 μ receptor 5C1M μ receptor 5C1M
TM5 212 G 5.66x66 μ receptor 5C1M - -
TM5 213 R 5.67x67 μ receptor 5C1M D2 receptor 6VMS
TM5 214 G 5.68x68 μ receptor 5C1M - -
ICL3 215 G - - - -
ICL3 216 S US28 5WB1 US28 5WB1
ICL3 217 H - - - -
TM6 218 R 6.28x29 μ receptor 5C1M α2B-adrenoceptor 6K41
TM6 219 R 6.29x30 μ receptor 5C1M AT2 receptor 6JOD
TM6 220 Q 6.30x31 μ receptor 5C1M 5-HT2B receptor 5TUD
TM6 221 R 6.31x32 μ receptor 5C1M μ receptor 5C1M
TM6 222 R 6.32x33 μ receptor 5C1M PAR2 5NDD
TM6 223 V 6.33x34 μ receptor 5C1M US28 5WB1
TM6 224 A 6.34x35 μ receptor 5C1M FFA1 receptor 5TZY
TM6 225 G 6.35x36 μ receptor 5C1M CysLT1 receptor 6RZ4
TM6 226 L 6.36x37 μ receptor 5C1M US28 5WB1
TM6 227 V 6.37x38 μ receptor 5C1M CB1 receptor 6N4B
TM6 228 A 6.38x39 μ receptor 5C1M AT2 receptor 6JOD
TM6 229 A 6.39x40 μ receptor 5C1M PAR1 3VW7
TM6 230 T 6.40x41 μ receptor 5C1M GPR52 6LI3
TM6 231 L 6.41x42 μ receptor 5C1M AT2 receptor 6JOD
TM6 232 L 6.42x43 μ receptor 5C1M D2 receptor 6VMS
TM6 233 N 6.43x44 μ receptor 5C1M - -
TM6 234 F 6.44x45 μ receptor 5C1M AT1 receptor 6OS2
TM6 235 L 6.45x46 PAR2 5NDD PAR2 5NDD
TM6 236 V 6.46x461 PAR2 5NDD P2Y1 receptor 4XNW
TM6 237 C 6.47x47 PAR2 5NDD PAR2 5NDD
TM6 238 F 6.48x48 μ receptor 5C1M PAR2 5NDD
TM6 239 G 6.49x49 μ receptor 5C1M CB1 receptor 6N4B
TM6 240 P 6.50x50 μ receptor 5C1M μ receptor 5C1M
TM6 241 Y 6.51x51 μ receptor 5C1M US28 5WB1
TM6 242 N 6.52x52 μ receptor 5C1M CCR6 6WWZ
TM6 243 V 6.53x53 μ receptor 5C1M AT2 receptor 6JOD
TM6 244 S 6.54x54 μ receptor 5C1M α2B-adrenoceptor 6K41
TM6 245 H 6.55x55 μ receptor 5C1M D2 receptor 6VMS
TM6 246 V 6.56x56 μ receptor 5C1M CB1 receptor 5XRA
TM6 247 V 6.57x57 μ receptor 5C1M κ receptor 6B73
TM6 248 G 6.58x58 μ receptor 5C1M FPR2/ALX 6LW5
TM6 249 Y 6.59x59 μ receptor 5C1M PAR2 5NDD
TM6 250 I 6.60x60 μ receptor 5C1M α2B-adrenoceptor 6K42
TM6 251 C 6.61x61 μ receptor 5C1M D2 receptor 6VMS
ECL3 252 G μ receptor 5C1M - -
ECL3 253 E μ receptor 5C1M - -
ECL3 254 S μ receptor 5C1M - -
ECL3 255 P μ receptor 5C1M - -
TM7 256 V 7.33x32 μ receptor 5C1M μ receptor 5C1M
TM7 257 W 7.34x33 μ receptor 5C1M FFA1 receptor 5TZY
TM7 258 R 7.35x34 μ receptor 5C1M FFA1 receptor 5TZY
TM7 259 I 7.36x35 μ receptor 5C1M US28 5WB1
TM7 260 Y 7.37x36 μ receptor 5C1M apelin receptor 5VBL
TM7 261 V 7.38x37 μ receptor 5C1M DP2 receptor 6D27
TM7 262 T 7.39x38 μ receptor 5C1M D2 receptor 6VMS
TM7 263 L 7.40x39 μ receptor 5C1M AT2 receptor 6JOD
TM7 264 L 7.41x40 μ receptor 5C1M μ receptor 5C1M
TM7 265 S 7.42x41 μ receptor 5C1M A2A receptor 4UHR
TM7 266 T 7.43x42 μ receptor 5C1M PAR2 5NDD
TM7 267 L 7.44x43 μ receptor 5C1M CCR6 6WWZ
TM7 268 N 7.45x45 μ receptor 5C1M μ receptor 5C1M
TM7 269 S 7.46x46 μ receptor 5C1M μ receptor 5C1M
TM7 270 C 7.47x47 μ receptor 5C1M μ receptor 5C1M
TM7 271 V 7.48x48 μ receptor 5C1M AT2 receptor 6JOD
TM7 272 D 7.49x49 μ receptor 5C1M EP3 receptor 6M9T
TM7 273 P 7.50x50 μ receptor 5C1M μ receptor 5C1M
TM7 274 F 7.51x51 PAR2 5NDD PAR2 5NDD
TM7 275 V 7.52x52 PAR2 5NDD PAR2 5NDD
TM7 276 Y 7.53x53 PAR2 5NDD PAR2 5NDD
TM7 277 Y 7.54x54 PAR2 5NDD PAR2 5NDD
TM7 278 F 7.55x55 PAR2 5NDD PAR2 5NDD
TM7 279 S 7.56x56 PAR2 5NDD 5-HT1B receptor 6G79
H8 280 S 8.47x47 PAR2 5NDD PAR2 5NDD
H8 281 S 8.48x48 PAR2 5NDD GPR52 6LI1
H8 282 G 8.49x49 PAR2 5NDD - -
H8 283 F 8.50x50 PAR2 5NDD AT2 receptor 6JOD
H8 284 Q 8.51x51 PAR2 5NDD AT2 receptor 6JOD
H8 285 A 8.52x52 PAR2 5NDD NOP receptor 5DHG
H8 286 D 8.53x53 PAR2 5NDD CCR7 6QZH
H8 287 F 8.54x54 PAR2 5NDD CCR6 6WWZ
H8 288 H 8.55x55 PAR2 5NDD US28 5WB1
H8 289 E 8.56x56 PAR2 5NDD β2-adrenoceptor 3SN6
H8 290 L 8.57x57 PAR2 5NDD US28 5WB1
H8 291 L 8.58x58 PAR2 5NDD PAR2 5NDD
H8 292 R 8.59x59 CCR9 5LWE AT2 receptor 6JOD
H8 293 R 8.60x60 CCR9 5LWE - -
H8 294 L 8.61x61 CCR9 5LWE CCR9 5LWE
C-term 295 C - - - -
C-term 296 G - - - -
C-term 297 L - - - -
C-term 298 W - - - -
C-term 299 G - - - -