P2Y13 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): 1.65 docs)

VERSION

2019-09-03

MODEL

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

NGL is a WebGL based 3D viewer powered by MMTF.

MAIN TEMPLATE

CCR2 (sequence similarity: 41%) PDB: 5T1A

TEMPLATES

5T1A (CCR2)
4NTJ (P2Y12 receptor)
4PXZ (P2Y12 receptor)
4XNW (P2Y1 receptor)
5ZKP (PAF receptor)
None
Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 77.8 13.2 8.9
Side-chains 17.2 60.9 21.9

Number of backbone templates: 5
Number of rotamer templates: 47

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 35 - - - -
N-term 36 - - - -
N-term 37 - - - -
N-term 38 - - - -
N-term 39 - - - -
TM1 40 1.28x28 CCR2 5T1A M3 receptor 5ZHP
TM1 41 1.29x29 CCR2 5T1A - -
TM1 42 1.30x30 CCR2 5T1A CCR2 5T1A
TM1 43 1.31x31 CCR2 5T1A MT2 receptor 6ME6
TM1 44 1.32x32 CCR2 5T1A CB1 receptor 5TGZ
TM1 45 1.33x33 CCR2 5T1A BLT1 receptor 5X33
TM1 46 1.34x34 CCR2 5T1A OX2 receptor 5WS3
TM1 47 1.35x35 CCR2 5T1A P2Y12 receptor 4NTJ
TM1 48 1.36x36 CCR2 5T1A CCR2 5T1A
TM1 49 1.37x37 CCR2 5T1A κ receptor 4DJH
TM1 50 1.38x38 CCR2 5T1A CCR2 5T1A
TM1 51 1.39x39 CCR2 5T1A CCR2 5T1A
TM1 52 1.40x40 CCR2 5T1A NK1 receptor 6HLP
TM1 53 1.41x41 CCR2 5T1A κ receptor 4DJH
TM1 54 1.42x42 CCR2 5T1A CCR2 5T1A
TM1 55 1.43x43 CCR2 5T1A CCR2 5T1A
TM1 56 1.44x44 CCR2 5T1A CXCR4 3ODU
TM1 57 1.45x45 CCR2 5T1A CXCR4 3ODU
TM1 58 1.46x46 CCR2 5T1A CCR2 5T1A
TM1 59 1.47x47 CCR2 5T1A CXCR4 3ODU
TM1 60 1.48x48 CCR2 5T1A CCR9 5LWE
TM1 61 1.49x49 CCR2 5T1A H1 receptor 3RZE
TM1 62 1.50x50 CCR2 5T1A CCR2 5T1A
TM1 63 1.51x51 CCR2 5T1A BLT1 receptor 5X33
TM1 64 1.52x52 CCR2 5T1A CCR2 5T1A
TM1 65 1.53x53 CCR2 5T1A EP4 receptor 5YWY
TM1 66 1.54x54 CCR2 5T1A apelin receptor 5VBL
TM1 67 1.55x55 CCR2 5T1A apelin receptor 5VBL
TM1 68 1.56x56 CCR2 5T1A CCR9 5LWE
TM1 69 1.57x57 CCR2 5T1A M1 receptor 5CXV
TM1 70 1.58x58 CCR2 5T1A δ receptor 4N6H
TM1 71 1.59x59 CCR2 5T1A CB1 receptor 5TGZ
TM1 72 1.60x60 CCR2 5T1A - -
ICL1 73 - - - -
ICL1 74 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
ICL1 75 - - - -
TM2 76 2.37x37 CCR2 5T1A CCR5 5UIW
TM2 77 2.38x38 CCR2 5T1A NTS1 receptor 4BUO
TM2 78 2.39x39 CCR2 5T1A EP4 receptor 5YWY
TM2 79 2.40x40 CCR2 5T1A P2Y12 receptor 4NTJ
TM2 80 2.41x41 CCR2 5T1A CCR2 5T1A
TM2 81 2.42x42 CCR2 5T1A CCR2 5T1A
TM2 82 2.43x43 CCR2 5T1A CCR2 5T1A
TM2 83 2.44x44 CCR2 5T1A P2Y12 receptor 4NTJ
TM2 84 2.45x45 CCR2 5T1A CCR2 5T1A
TM2 85 2.46x46 CCR2 5T1A P2Y12 receptor 4NTJ
TM2 86 2.47x47 CCR2 5T1A EP4 receptor 5YWY
TM2 87 2.48x48 CCR2 5T1A CXCR4 3ODU
TM2 88 2.49x49 CCR2 5T1A CCR9 5LWE
TM2 89 2.50x50 CCR2 5T1A CCR2 5T1A
TM2 90 2.51x51 CCR2 5T1A CCR2 5T1A
TM2 91 2.52x52 CCR2 5T1A H1 receptor 3RZE
TM2 92 2.53x53 CCR2 5T1A NK1 receptor 6HLP
TM2 93 2.54x54 CCR2 5T1A κ receptor 4DJH
TM2 94 2.55x55 CCR2 5T1A CCR5 5UIW
TM2 95 2.56x56 CCR2 5T1A - -
TM2 96 2.57x57 CCR2 5T1A CCR2 5T1A
TM2 97 2.58x58 CCR2 5T1A CCR2 5T1A
TM2 98 2.59x59 CCR2 5T1A CCR9 5LWE
TM2 99 2.60x60 CCR2 5T1A P2Y12 receptor 4NTJ
TM2 100 2.61x61 CCR2 5T1A H1 receptor 3RZE
TM2 101 2.62x62 CCR2 5T1A OX1 receptor 4ZJ8
TM2 102 2.63x63 CCR2 5T1A CCR2 5T1A
TM2 103 2.64x64 CCR2 5T1A OX2 receptor 5WS3
TM2 104 2.65x65 CCR2 5T1A AT2 receptor 5UNG
TM2 105 2.66x66 CCR2 5T1A Rhodopsin 1GZM
ECL1 106 - - - -
ECL1 107 P2Y12 receptor 4PXZ - -
ECL1 108 - - - -
TM3 109 3.18x18 P2Y12 receptor 4PXZ - -
TM3 110 3.19x19 P2Y12 receptor 4PXZ - -
TM3 111 3.20x20 P2Y12 receptor 4PXZ P2Y12 receptor 4PXZ
TM3 112 3.21x21 CCR2 5T1A - -
TM3 113 3.22x22 CCR2 5T1A ETB receptor 5X93
TM3 114 3.23x23 CCR2 5T1A CXCR4 3ODU
TM3 115 3.24x24 CCR2 5T1A M2 receptor 5ZKC
TM3 116 3.25x25 CCR2 5T1A CCR2 5T1A
TM3 117 3.26x26 CCR2 5T1A BLT1 receptor 5X33
TM3 118 3.27x27 CCR2 5T1A NK1 receptor 6HLP
TM3 119 3.28x28 CCR2 5T1A apelin receptor 5VBL
TM3 120 3.29x29 CCR2 5T1A AT1 receptor 4ZUD
TM3 121 3.30x30 CCR2 5T1A CXCR4 3ODU
TM3 122 3.31x31 CCR2 5T1A CXCR4 3ODU
TM3 123 3.32x32 CCR2 5T1A DP2 receptor 6D27
TM3 124 3.33x33 CCR2 5T1A κ receptor 4DJH
TM3 125 3.34x34 CCR2 5T1A - -
TM3 126 3.35x35 CCR2 5T1A CB2 receptor 5ZTY
TM3 127 3.36x36 CCR2 5T1A κ receptor 4DJH
TM3 128 3.37x37 CCR2 5T1A CCR9 5LWE
TM3 129 3.38x38 CCR2 5T1A OX2 receptor 5WS3
TM3 130 3.39x39 CCR2 5T1A CCR2 5T1A
TM3 131 3.40x40 CCR2 5T1A CCR2 5T1A
TM3 132 3.41x41 CCR2 5T1A - -
TM3 133 3.42x42 CCR2 5T1A CCR9 5LWE
TM3 134 3.43x43 CCR2 5T1A CXCR4 3ODU
TM3 135 3.44x44 CCR2 5T1A P2Y12 receptor 4NTJ
TM3 136 3.45x45 CCR2 5T1A CCR2 5T1A
TM3 137 3.46x46 CCR2 5T1A CCR9 5LWE
TM3 138 3.47x47 CCR2 5T1A OX2 receptor 5WS3
TM3 139 3.48x48 CCR2 5T1A apelin receptor 5VBL
TM3 140 3.49x49 CCR2 5T1A CCR2 5T1A
TM3 141 3.50x50 CCR2 5T1A CCR2 5T1A
TM3 142 3.51x51 CCR2 5T1A C5a1 receptor 5O9H
TM3 143 3.52x52 CCR2 5T1A CCR2 5T1A
TM3 144 3.53x53 CCR2 5T1A P2Y12 receptor 4NTJ
TM3 145 3.54x54 CCR2 5T1A CCR2 5T1A
TM3 146 3.55x55 CCR2 5T1A NK1 receptor 6HLP
TM3 147 3.56x56 CCR2 5T1A apelin receptor 5VBL
ICL2 148 34.50x50 - - - -
ICL2 149 34.51x51 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
ICL2 150 34.52x52 P2Y1 receptor 4XNW CCR9 5LWE
ICL2 151 34.53x53 P2Y1 receptor 4XNW Rhodopsin 4ZWJ
ICL2 152 34.54x54 P2Y1 receptor 4XNW - -
ICL2 153 34.55x55 P2Y1 receptor 4XNW - -
ICL2 154 34.56x56 P2Y1 receptor 4XNW A2A receptor 3VG9
ICL2 155 34.57x57 - - - -
TM4 156 4.38x38 CCR2 5T1A P2Y1 receptor 4XNW
TM4 157 4.39x39 CCR2 5T1A κ receptor 4DJH
TM4 158 4.40x40 CCR2 5T1A apelin receptor 5VBL
TM4 159 4.41x41 CCR2 5T1A CCR2 5T1A
TM4 160 4.42x42 CCR2 5T1A AT1 receptor 4ZUD
TM4 161 4.43x43 CCR2 5T1A CCR9 5LWE
TM4 162 4.44x44 CCR2 5T1A - -
TM4 163 4.45x45 CCR2 5T1A CCR9 5LWE
TM4 164 4.46x46 CCR2 5T1A CCR2 5T1A
TM4 165 4.47x47 CCR2 5T1A AT1 receptor 4ZUD
TM4 166 4.48x48 CCR2 5T1A Rhodopsin 1GZM
TM4 167 4.49x49 CCR2 5T1A CCR9 5LWE
TM4 168 4.50x50 CCR2 5T1A CCR2 5T1A
TM4 169 4.51x51 CCR2 5T1A H1 receptor 3RZE
TM4 170 4.52x52 CCR2 5T1A P2Y12 receptor 4NTJ
TM4 171 4.53x53 CCR2 5T1A - -
TM4 172 4.54x54 CCR2 5T1A BLT1 receptor 5X33
TM4 173 4.55x55 CCR2 5T1A CCR2 5T1A
TM4 174 4.56x56 CCR2 5T1A μ receptor 4DKL
TM4 175 4.57x57 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM4 176 4.58x58 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM4 177 4.59x59 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM4 178 4.60x60 CCR2 5T1A P2Y12 receptor 4NTJ
TM4 179 4.61x61 CCR2 5T1A AT2 receptor 5UNG
TM4 180 4.62x62 CCR2 5T1A CCR2 5T1A
TM4 181 4.63x63 CCR2 5T1A κ receptor 4DJH
TM4 182 4.64x64 CCR2 5T1A - -
ECL2 183 CCR2 5T1A - -
ECL2 184 CCR2 5T1A - -
ECL2 185 CCR2 5T1A - -
ECL2 186 CCR2 5T1A - -
ECL2 187 CCR2 5T1A - -
ECL2 188 CCR2 5T1A - -
ECL2 189 CCR2 5T1A - -
ECL2 190 CCR2 5T1A - -
ECL2 191 CCR2 5T1A - -
ECL2 192 CCR2 5T1A - -
ECL2 193 - - - -
ECL2 194 45.50x50 CCR2 5T1A CCR2 5T1A
ECL2 195 45.51x51 CCR2 5T1A AT1 receptor 4ZUD
ECL2 196 45.52x52 CCR2 5T1A CCR5 5UIW
ECL2 197 - - - -
ECL2 198 P2Y12 receptor 4PXZ P2Y12 receptor 4PXZ
ECL2 199 - - - -
TM5 200 5.30x30 P2Y12 receptor 4NTJ - -
TM5 201 5.31x31 P2Y12 receptor 4NTJ - -
TM5 202 5.32x32 CCR2 5T1A - -
TM5 203 5.33x33 CCR2 5T1A P2Y12 receptor 4NTJ
TM5 204 5.34x34 CCR2 5T1A - -
TM5 205 5.35x35 CCR2 5T1A CCR2 5T1A
TM5 206 5.36x36 CCR2 5T1A EP4 receptor 5YWY
TM5 207 5.37x37 CCR2 5T1A β2-adrenoceptor 5JQH
TM5 208 5.38x38 CCR2 5T1A OX2 receptor 5WS3
TM5 209 5.39x39 CCR2 5T1A C5a1 receptor 5O9H
TM5 210 5.40x40 CCR2 5T1A P2Y12 receptor 4NTJ
TM5 211 5.41x41 CCR2 5T1A - -
TM5 212 5.42x42 CCR2 5T1A 5-HT2A receptor 6A94
TM5 213 5.43x43 CCR2 5T1A S1P1 receptor 3V2Y
TM5 214 5.44x44 CCR2 5T1A P2Y12 receptor 4NTJ
TM5 215 5.45x45 CCR2 5T1A BLT1 receptor 5X33
TM5 216 5.46x46 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM5 217 5.47x47 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM5 218 5.48x48 CCR2 5T1A P2Y12 receptor 4NTJ
TM5 219 5.49x49 CCR2 5T1A 5-HT2B receptor 4IB4
TM5 220 5.50x50 CCR2 5T1A PAF receptor 5ZKP
TM5 221 5.51x51 CCR2 5T1A AT1 receptor 4ZUD
TM5 222 5.52x52 CCR2 5T1A CXCR4 3ODU
TM5 223 5.53x53 CCR2 5T1A OX2 receptor 5WS3
TM5 224 5.54x54 CCR2 5T1A CCR2 5T1A
TM5 225 5.55x55 CCR2 5T1A CXCR4 3ODU
TM5 226 5.56x56 CCR2 5T1A κ receptor 4DJH
TM5 227 5.57x57 CCR2 5T1A ETB receptor 5X93
TM5 228 5.58x58 CCR2 5T1A CCR2 5T1A
TM5 229 5.59x59 CCR2 5T1A EP4 receptor 5YWY
TM5 230 5.60x60 CCR2 5T1A NTS1 receptor 4BUO
TM5 231 5.61x61 CCR2 5T1A CCR2 5T1A
TM5 232 5.62x62 P2Y12 receptor 4NTJ apelin receptor 5VBL
TM5 233 5.63x63 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM5 234 5.64x64 P2Y12 receptor 4NTJ CXCR4 3ODU
TM5 235 5.65x65 P2Y12 receptor 4NTJ H1 receptor 3RZE
TM5 236 5.66x66 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM5 237 5.67x67 P2Y12 receptor 4NTJ EP3 receptor 6AK3
TM5 238 5.68x68 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM5 239 5.69x69 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM5 240 5.70x70 P2Y12 receptor 4NTJ NTS1 receptor 6OSA
TM5 241 5.71x71 P2Y12 receptor 4NTJ β2-adrenoceptor 3SN6
TM5 242 5.72x72 P2Y12 receptor 4NTJ - -
ICL3 243 - - - -
ICL3 244 - - - -
ICL3 245 - - - -
ICL3 246 - - - -
ICL3 247 - - - -
ICL3 248 - - - -
TM6 249 6.29x30 PAF receptor 5ZKP S1P1 receptor 3V2Y
TM6 250 6.30x31 PAF receptor 5ZKP - -
TM6 251 6.31x32 PAF receptor 5ZKP CCR9 5LWE
TM6 252 6.32x33 CCR2 5T1A P2Y1 receptor 4XNW
TM6 253 6.33x34 CCR2 5T1A CCR9 5LWE
TM6 254 6.34x35 CCR2 5T1A - -
TM6 255 6.35x36 CCR2 5T1A - -
TM6 256 6.36x37 CCR2 5T1A P2Y12 receptor 4PXZ
TM6 257 6.37x38 CCR2 5T1A CXCR4 3ODU
TM6 258 6.38x39 CCR2 5T1A H1 receptor 3RZE
TM6 259 6.39x40 CCR2 5T1A CCR9 5LWE
TM6 260 6.40x41 CCR2 5T1A AT1 receptor 4ZUD
TM6 261 6.41x42 CCR2 5T1A apelin receptor 5VBL
TM6 262 6.42x43 CCR2 5T1A CXCR4 3ODU
TM6 263 6.43x44 CCR2 5T1A EP4 receptor 5YWY
TM6 264 6.44x45 CCR2 5T1A CCR2 5T1A
TM6 265 6.45x46 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM6 266 6.46x461 P2Y12 receptor 4NTJ TP receptor 6IIV
TM6 267 6.47x47 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM6 268 6.48x48 CCR2 5T1A MT1 receptor 6ME2
TM6 269 6.49x49 CCR2 5T1A CCR5 5UIW
TM6 270 6.50x50 CCR2 5T1A CCR2 5T1A
TM6 271 6.51x51 CCR2 5T1A NK1 receptor 6HLP
TM6 272 6.52x52 CCR2 5T1A κ receptor 4DJH
TM6 273 6.53x53 CCR2 5T1A MT1 receptor 6ME2
TM6 274 6.54x54 CCR2 5T1A ETB receptor 5X93
TM6 275 6.55x55 CCR2 5T1A NTS1 receptor 4BUO
TM6 276 6.56x56 CCR2 5T1A OX2 receptor 5WS3
TM6 277 6.57x57 CCR2 5T1A P2Y12 receptor 4NTJ
TM6 278 6.58x58 CCR2 5T1A apelin receptor 5VBL
TM6 279 6.59x59 CCR2 5T1A CCR2 5T1A
TM6 280 6.60x60 CCR2 5T1A - -
TM6 281 6.61x61 CCR2 5T1A P2Y12 receptor 4PXZ
TM6 282 6.62x62 CCR2 5T1A AT1 receptor 4ZUD
TM6 283 6.63x63 CCR2 5T1A P2Y12 receptor 4PXZ
TM6 284 6.64x64 CCR2 5T1A - -
ECL3 285 - - - -
ECL3 286 P2Y12 receptor 4PXZ - -
ECL3 287 - - - -
TM7 288 7.24x23 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM7 289 7.25x24 P2Y12 receptor 4NTJ P2Y12 receptor 4NTJ
TM7 290 7.26x25 CCR2 5T1A AT1 receptor 4ZUD
TM7 291 7.27x26 CCR2 5T1A NTS1 receptor 4BUO
TM7 292 7.28x27 CCR2 5T1A 5-HT2C receptor 6BQH
TM7 293 7.29x28 CCR2 5T1A CCR5 5UIW
TM7 294 7.30x29 CCR2 5T1A CCR2 5T1A
TM7 295 7.31x30 CCR2 5T1A CCR2 5T1A
TM7 296 7.32x31 CCR2 5T1A P2Y12 receptor 4NTJ
TM7 297 7.33x32 CCR2 5T1A CCR9 5LWE
TM7 298 7.34x33 CCR2 5T1A CCR2 5T1A
TM7 299 7.35x34 CCR2 5T1A P2Y12 receptor 4NTJ
TM7 300 7.36x35 CCR2 5T1A M1 receptor 5CXV
TM7 301 7.37x36 CCR2 5T1A MT2 receptor 6ME6
TM7 302 7.38x37 CCR2 5T1A CCR2 5T1A
TM7 303 7.39x38 CCR2 5T1A S1P1 receptor 3V2Y
TM7 304 7.40x39 CCR2 5T1A Rhodopsin 1GZM
TM7 305 7.41x40 CCR2 5T1A CCR2 5T1A
TM7 306 7.42x41 CCR2 5T1A CCR9 5LWE
TM7 307 7.43x42 CCR2 5T1A FFA1 receptor 5TZY
TM7 308 7.44x43 CCR2 5T1A CCR2 5T1A
TM7 309 7.45x45 CCR2 5T1A AT1 receptor 4ZUD
TM7 310 7.46x46 CCR2 5T1A - -
TM7 311 7.47x47 CCR2 5T1A CCR2 5T1A
TM7 312 7.48x48 CCR2 5T1A A1 receptor 5UEN
TM7 313 7.49x49 CCR2 5T1A EP4 receptor 5YWY
TM7 314 7.50x50 CCR2 5T1A CCR2 5T1A
TM7 315 7.51x51 CCR2 5T1A AT1 receptor 4ZUD
TM7 316 7.52x52 CCR2 5T1A CCR2 5T1A
TM7 317 7.53x53 CCR2 5T1A CCR2 5T1A
TM7 318 7.54x54 CCR2 5T1A Rhodopsin 1GZM
TM7 319 7.55x55 CCR2 5T1A CCR2 5T1A
TM7 320 7.56x56 CCR2 5T1A κ receptor 4DJH
H8 321 8.47x47 CCR2 5T1A P2Y12 receptor 4NTJ
H8 322 8.48x48 CCR2 5T1A ETB receptor 5X93
H8 323 8.49x49 CCR2 5T1A CCR2 5T1A
H8 324 8.50x50 CCR2 5T1A CCR2 5T1A
H8 325 8.51x51 CCR2 5T1A - -
H8 326 8.52x52 CCR2 5T1A OX2 receptor 5WS3
H8 327 8.53x53 CCR2 5T1A DP2 receptor 6D27
H8 328 8.54x54 CCR2 5T1A CCR9 5LWE
H8 329 8.55x55 CCR2 5T1A - -
H8 330 8.56x56 CCR2 5T1A US28 4XT1
H8 331 8.57x57 P2Y12 receptor 4NTJ CB1 receptor 6N4B
C-term 332 - - - -
C-term 333 - - - -
C-term 334 - - - -
C-term 335 - - - -
C-term 336 - - - -